RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 MYRFQ9Y2G1 1151 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 FNDC3AQ9Y2H6 1198 aaKnown RBP7.15□□□□□ -1.26
VPS13C-206ENST00000558338 SH3BP1Q9Y3L3 701 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 PCDHGA10Q9Y5H3 936 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 CPQQ9Y646 472 aa7.15□□□□□ -1.26
VPS13C-206ENST00000558338 KATNA1O75449 491 aa7.15□□□□□ -1.27
VPS13C-206ENST00000558338 PGM3O95394 542 aa7.15□□□□□ -1.27
VPS13C-206ENST00000558338 H6PDO95479 791 aa7.15□□□□□ -1.27
VPS13C-206ENST00000558338 CAPN1P07384 714 aa7.15□□□□□ -1.27
VPS13C-206ENST00000558338 CTPS1P17812 591 aa7.15□□□□□ -1.27
VPS13C-206ENST00000558338 PPM1AP35813 382 aa7.15□□□□□ -1.27
VPS13C-206ENST00000558338 UFM1P61960 85 aa7.15□□□□□ -1.27
VPS13C-206ENST00000558338 SNRPD1P62314 119 aaKnown RBP7.15□□□□□ -1.27
VPS13C-206ENST00000558338 SLC7A9P82251 487 aa7.15□□□□□ -1.27
VPS13C-206ENST00000558338 ECT2LQ008S8 904 aa7.15□□□□□ -1.27
VPS13C-206ENST00000558338 PRKCQQ04759 706 aa7.15□□□□□ -1.27
VPS13C-206ENST00000558338 LIPEQ05469 1076 aa7.15□□□□□ -1.27
VPS13C-206ENST00000558338 CAPRIN1Q14444 709 aaKnown RBP7.15□□□□□ -1.27
VPS13C-206ENST00000558338 RBBP5Q15291 538 aaKnown RBP7.15□□□□□ -1.27
VPS13C-206ENST00000558338 ATP6AP1Q15904 470 aa7.15□□□□□ -1.27
VPS13C-206ENST00000558338 CYP51A1Q16850 503 aa7.15□□□□□ -1.27
VPS13C-206ENST00000558338 NAIF1Q69YI7 327 aaPredicted RBP7.15□□□□□ -1.27
VPS13C-206ENST00000558338 LETMD1Q6P1Q0 360 aa7.15□□□□□ -1.27
VPS13C-206ENST00000558338 IL27RAQ6UWB1 636 aa7.15□□□□□ -1.27
VPS13C-206ENST00000558338 FAM151BQ6UXP7 276 aa7.15□□□□□ -1.27
VPS13C-206ENST00000558338 TPGS1Q6ZTW0 290 aa7.15□□□□□ -1.27
VPS13C-206ENST00000558338 HTR3DQ70Z44 454 aa7.15□□□□□ -1.27
VPS13C-206ENST00000558338 MILR1Q7Z6M3 343 aa7.15□□□□□ -1.27
VPS13C-206ENST00000558338 KIAA0907Q7Z7F0 614 aaPredicted RBP7.15□□□□□ -1.27
VPS13C-206ENST00000558338 SATL1Q86VE3 508 aa7.15□□□□□ -1.27
VPS13C-206ENST00000558338 SPPL2CQ8IUH8 684 aa7.15□□□□□ -1.27
VPS13C-206ENST00000558338 CMTR2Q8IYT2 770 aaKnown RBP7.15□□□□□ -1.27
VPS13C-206ENST00000558338 ADGRG5Q8IZF4 528 aa7.15□□□□□ -1.27
VPS13C-206ENST00000558338 ZNF557Q8N988 423 aaPredicted RBP7.15□□□□□ -1.27
VPS13C-206ENST00000558338 LEMD2Q8NC56 503 aa7.15□□□□□ -1.27
VPS13C-206ENST00000558338 OR8J3Q8NGG0 315 aa7.15□□□□□ -1.27
VPS13C-206ENST00000558338 OR2T11Q8NH01 316 aa7.15□□□□□ -1.27
VPS13C-206ENST00000558338 DNAJB8Q8NHS0 232 aa7.15□□□□□ -1.27
VPS13C-206ENST00000558338 WBP2Q969T9 261 aa7.15□□□□□ -1.27
VPS13C-206ENST00000558338 ISG20Q96AZ6 181 aaKnown RBP7.15□□□□□ -1.27
VPS13C-206ENST00000558338 RMND5BQ96G75 393 aaPredicted RBP7.15□□□□□ -1.27
VPS13C-206ENST00000558338 PLEKHG4BQ96PX9 1271 aa7.15□□□□□ -1.27
VPS13C-206ENST00000558338 PRPF18Q99633 342 aaKnown RBP7.15□□□□□ -1.27
VPS13C-206ENST00000558338 CIB1Q99828 191 aa7.15□□□□□ -1.27
VPS13C-206ENST00000558338 EGFL8Q99944 293 aa7.15□□□□□ -1.27
VPS13C-206ENST00000558338 EMILIN2Q9BXX0 1053 aa7.15□□□□□ -1.27
VPS13C-206ENST00000558338 SLC29A3Q9BZD2 475 aa7.15□□□□□ -1.27
VPS13C-206ENST00000558338 CIPCQ9C0C6 399 aa7.15□□□□□ -1.27
VPS13C-206ENST00000558338 PIDD1Q9HB75 910 aa7.15□□□□□ -1.27
VPS13C-206ENST00000558338 CD320Q9NPF0 282 aa7.15□□□□□ -1.27
VPS13C-206ENST00000558338 LATS2Q9NRM7 1088 aa7.15□□□□□ -1.27
VPS13C-206ENST00000558338 ABCB8Q9NUT2 735 aa7.15□□□□□ -1.27
VPS13C-206ENST00000558338 ASIC5Q9NY37 505 aa7.15□□□□□ -1.27
VPS13C-206ENST00000558338 SPG21Q9NZD8 308 aa7.15□□□□□ -1.27
VPS13C-206ENST00000558338 ZNF225Q9UK10 706 aa7.15□□□□□ -1.27
VPS13C-206ENST00000558338 PTBP2Q9UKA9 531 aaKnown RBP7.15□□□□□ -1.27
VPS13C-206ENST00000558338 SLC8A2Q9UPR5 921 aa7.15□□□□□ -1.27
VPS13C-206ENST00000558338 PCDHB3Q9Y5E6 796 aa7.15□□□□□ -1.27
VPS13C-206ENST00000558338 ST14Q9Y5Y6 855 aa7.15□□□□□ -1.27
VPS13C-206ENST00000558338 LTBP2Q14767 1821 aa7.15□□□□□ -1.27
VPS13C-206ENST00000558338 TRAV19A0A0A6YYK7 116 aa7.14□□□□□ -1.27
VPS13C-206ENST00000558338 A0A1B0GTL3 188 aa7.14□□□□□ -1.27
VPS13C-206ENST00000558338 C7orf72A4D263 438 aa7.14□□□□□ -1.27
VPS13C-206ENST00000558338 ASPDHA6ND91 283 aa7.14□□□□□ -1.27
VPS13C-206ENST00000558338 PABPN1LA6NDY0 278 aaKnown RBP7.14□□□□□ -1.27
VPS13C-206ENST00000558338 H3BNH8 94 aa7.14□□□□□ -1.27
VPS13C-206ENST00000558338 K7EPI3 171 aa7.14□□□□□ -1.27
VPS13C-206ENST00000558338 LSM1O15116 133 aaKnown RBP7.14□□□□□ -1.27
VPS13C-206ENST00000558338 INPP4BO15327 924 aa7.14□□□□□ -1.27
VPS13C-206ENST00000558338 EFCAB14O75071 495 aa7.14□□□□□ -1.27
VPS13C-206ENST00000558338 SLC25A14O95258 325 aaPredicted RBP7.14□□□□□ -1.27
VPS13C-206ENST00000558338 KCNH1O95259 989 aa7.14□□□□□ -1.27
VPS13C-206ENST00000558338 RASAL1O95294 804 aa7.14□□□□□ -1.27
VPS13C-206ENST00000558338 LDLRP01130 860 aa7.14□□□□□ -1.27
VPS13C-206ENST00000558338 TFAP2AP05549 437 aa7.14□□□□□ -1.27
VPS13C-206ENST00000558338 ALPIP09923 528 aa7.14□□□□□ -1.27
VPS13C-206ENST00000558338 EBLN1P0CF75 366 aa7.14□□□□□ -1.27
VPS13C-206ENST00000558338 ZNF23P17027 643 aa7.14□□□□□ -1.27
VPS13C-206ENST00000558338 VARSP26640 1264 aaKnown RBP7.14□□□□□ -1.27
VPS13C-206ENST00000558338 PRDX3P30048 256 aaKnown RBP7.14□□□□□ -1.27
VPS13C-206ENST00000558338 NSG1P42857 185 aa7.14□□□□□ -1.27
VPS13C-206ENST00000558338 ZFP36L2P47974 494 aaKnown RBP7.14□□□□□ -1.27
VPS13C-206ENST00000558338 CCL23P55773 120 aa7.14□□□□□ -1.27
VPS13C-206ENST00000558338 TRAF3Q13114 568 aa7.14□□□□□ -1.27
VPS13C-206ENST00000558338 PWP1Q13610 501 aa7.14□□□□□ -1.27
VPS13C-206ENST00000558338 NADK2Q4G0N4 442 aa7.14□□□□□ -1.27
VPS13C-206ENST00000558338 KCTD21Q4G0X4 260 aa7.14□□□□□ -1.27
VPS13C-206ENST00000558338 TIGD2Q4W5G0 525 aa7.14□□□□□ -1.27
VPS13C-206ENST00000558338 PITRM1Q5JRX3 1037 aa7.14□□□□□ -1.27
VPS13C-206ENST00000558338 THEMIS2Q5TEJ8 643 aa7.14□□□□□ -1.27
VPS13C-206ENST00000558338 CACHD1Q5VU97 1274 aa7.14□□□□□ -1.27
VPS13C-206ENST00000558338 IYDQ6PHW0 289 aa7.14□□□□□ -1.27
VPS13C-206ENST00000558338 CYP20A1Q6UW02 462 aa7.14□□□□□ -1.27
VPS13C-206ENST00000558338 B3GNT6Q6ZMB0 384 aa7.14□□□□□ -1.27
VPS13C-206ENST00000558338 LIN28BQ6ZN17 250 aaKnown RBP eCLIP7.14□□□□□ -1.27
VPS13C-206ENST00000558338 USP45Q70EL2 814 aa7.14□□□□□ -1.27
VPS13C-206ENST00000558338 DEFB128Q7Z7B8 93 aa7.14□□□□□ -1.27
VPS13C-206ENST00000558338 AMIGO2Q86SJ2 522 aa7.14□□□□□ -1.27
VPS13C-206ENST00000558338 TMEM150AQ86TG1 271 aa7.14□□□□□ -1.27
VPS13C-206ENST00000558338 ELMOD1Q8N336 334 aa7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms