RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 SBF2Q86WG5 1849 aa13.61□□□□□ -0.23
SHMT2-226ENST00000556825 TCRBV5S2A0A599 114 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 SLC22A23A1A5C7 686 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 EFCAB10A6NFE3 127 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 DFFAO00273 331 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 ARPC2O15144 300 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 SGCEO43556 437 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 SIGLEC6O43699 453 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 RPS6KA4O75676 772 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 PDE9AO76083 593 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 DNTTP04053 509 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 ACSM4P0C7M7 580 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 HK1P19367 917 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 KPNA2P52292 529 aaKnown RBP13.6□□□□□ -0.23
SHMT2-226ENST00000556825 DCDC1P59894 354 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 DYNLT1P63172 113 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 SEMA5AQ13591 1074 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 ZNF792Q3KQV3 632 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 GPR158Q5T848 1215 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 IER5Q5VY09 327 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 SMYD5Q6GMV2 418 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 CYS1Q717R9 158 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 C12orf40Q86WS4 652 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 TNS4Q8IZW8 715 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 FEZF2Q8TBJ5 459 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 SLC13A3Q8WWT9 602 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 KIAA1191Q96A73 305 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 TOX2Q96NM4 488 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 ZNF251Q9BRH9 671 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 QTRT2Q9H974 415 aaKnown RBP13.6□□□□□ -0.23
SHMT2-226ENST00000556825 ACOT13Q9NPJ3 140 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 COPZ2Q9P299 210 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 ABCD2Q9UBJ2 740 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 ZDHHC2Q9UIJ5 367 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 SLC6A14Q9UN76 642 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 VPS9D1Q9Y2B5 631 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 KCNK7Q9Y2U2 307 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 TPRKBQ9Y3C4 175 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 MTF2Q9Y483 593 aaPredicted RBP13.6□□□□□ -0.23
SHMT2-226ENST00000556825 SESN1Q9Y6P5 492 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 KAT6AQ92794 2004 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 STMND1H3BQB6 276 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 DNASE2O00115 360 aaPredicted RBP13.6□□□□□ -0.23
SHMT2-226ENST00000556825 WWP2O00308 870 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 PMM2O15305 246 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 INPP4BO15327 924 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 XPNPEP2O43895 674 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 ALDH1A1P00352 501 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 TCF3P15923 654 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 RYKP34925 604 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 CA5AP35218 305 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 EPHA5P54756 1037 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 YWHAEP62258 255 aaKnown RBP13.6□□□□□ -0.23
SHMT2-226ENST00000556825 PUDPQ08623 228 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 CDK5R2Q13319 367 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 TFDP2Q14188 446 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 QPRTQ15274 297 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 GPR19Q15760 415 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 C21orf62-AS1Q17RA5 79 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 TRIM60Q495X7 471 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 PRMT9Q6P2P2 845 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 FBLIM1Q8WUP2 373 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 UPF1Q92900 1129 aaKnown RBP eCLIP13.6□□□□□ -0.234e-7■■■■□ 25.7
SHMT2-226ENST00000556825 REG4Q9BYZ8 158 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 AMBRA1Q9C0C7 1298 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 ASAH2Q9NR71 780 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 ZNF358Q9NW07 568 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 PIH1D1Q9NWS0 290 aaKnown RBP13.6□□□□□ -0.23
SHMT2-226ENST00000556825 CCNL1Q9UK58 526 aaPredicted RBP13.6□□□□□ -0.23
SHMT2-226ENST00000556825 LRFN2Q9ULH4 789 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 PCDHA11Q9Y5I1 949 aa13.6□□□□□ -0.23
SHMT2-226ENST00000556825 OR2A25A4D2G3 310 aa13.59□□□□□ -0.23
SHMT2-226ENST00000556825 TRABD2BA6NFA1 517 aa13.59□□□□□ -0.23
SHMT2-226ENST00000556825 WTIPA6NIX2 430 aaPredicted RBP13.59□□□□□ -0.23
SHMT2-226ENST00000556825 PRMT5O14744 637 aaPredicted RBP13.59□□□□□ -0.23
SHMT2-226ENST00000556825 ZBTB24O43167 697 aaPredicted RBP13.59□□□□□ -0.23
SHMT2-226ENST00000556825 USP2O75604 605 aaPredicted RBP13.59□□□□□ -0.23
SHMT2-226ENST00000556825 CYBBP04839 570 aa13.59□□□□□ -0.23
SHMT2-226ENST00000556825 JUNDP17535 347 aa13.59□□□□□ -0.23
SHMT2-226ENST00000556825 EVX2Q03828 476 aa13.59□□□□□ -0.23
SHMT2-226ENST00000556825 SCN1BQ07699 218 aa13.59□□□□□ -0.23
SHMT2-226ENST00000556825 EXOSC2Q13868 293 aaKnown RBP13.59□□□□□ -0.23
SHMT2-226ENST00000556825 PRPSAP1Q14558 356 aa13.59□□□□□ -0.23
SHMT2-226ENST00000556825 ERFEQ4G0M1 354 aa13.59□□□□□ -0.23
SHMT2-226ENST00000556825 FLYWCH1Q4VC44 716 aa13.59□□□□□ -0.23
SHMT2-226ENST00000556825 CEP68Q76N32 757 aa13.59□□□□□ -0.23
SHMT2-226ENST00000556825 RDH11Q8TC12 318 aa13.59□□□□□ -0.23
SHMT2-226ENST00000556825 SETD7Q8WTS6 366 aaKnown RBP13.59□□□□□ -0.23
SHMT2-226ENST00000556825 RAB7BQ96AH8 199 aa13.59□□□□□ -0.23
SHMT2-226ENST00000556825 HOPXQ9BPY8 73 aaPredicted RBP13.59□□□□□ -0.23
SHMT2-226ENST00000556825 TBCDQ9BTW9 1192 aa13.59□□□□□ -0.23
SHMT2-226ENST00000556825 MUC13Q9H3R2 512 aa13.59□□□□□ -0.23
SHMT2-226ENST00000556825 LTB4R2Q9NPC1 389 aa13.59□□□□□ -0.23
SHMT2-226ENST00000556825 BIN3Q9NQY0 253 aa13.59□□□□□ -0.23
SHMT2-226ENST00000556825 EXD2Q9NVH0 621 aa13.59□□□□□ -0.23
SHMT2-226ENST00000556825 NARFQ9UHQ1 456 aa13.59□□□□□ -0.23
SHMT2-226ENST00000556825 RPS6KA6Q9UK32 745 aa13.59□□□□□ -0.23
SHMT2-226ENST00000556825 NAV1Q8NEY1 1877 aa13.59□□□□□ -0.23
SHMT2-226ENST00000556825 SLC12A8A0AV02 714 aa13.59□□□□□ -0.23
SHMT2-226ENST00000556825 TUBAL3A6NHL2 446 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms