RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 STK39Q9UEW8 545 aa4.68□□□□□ -1.66
PRPF39-209ENST00000556353 NAALADL1Q9UQQ1 740 aa4.68□□□□□ -1.66
PRPF39-209ENST00000556353 JRKLQ9Y4A0 524 aa4.68□□□□□ -1.66
PRPF39-209ENST00000556353 KIF7Q2M1P5 1343 aa4.68□□□□□ -1.66
PRPF39-209ENST00000556353 KDM3AQ9Y4C1 1321 aa4.68□□□□□ -1.66
PRPF39-209ENST00000556353 A0A1W2PP11 408 aa4.67□□□□□ -1.66
PRPF39-209ENST00000556353 A0A1W2PRG0 241 aa4.67□□□□□ -1.66
PRPF39-209ENST00000556353 C1orf226A1L170 272 aa4.67□□□□□ -1.66
PRPF39-209ENST00000556353 ANKRD66B4E2M5 251 aa4.67□□□□□ -1.66
PRPF39-209ENST00000556353 HHLA1C9JL84 531 aa4.67□□□□□ -1.66
PRPF39-209ENST00000556353 BUD23O43709 281 aaKnown RBP4.67□□□□□ -1.66
PRPF39-209ENST00000556353 PYGLP06737 847 aa4.67□□□□□ -1.66
PRPF39-209ENST00000556353 PRSS56P0CW18 603 aa4.67□□□□□ -1.66
PRPF39-209ENST00000556353 HARS2P49590 506 aaKnown RBP4.67□□□□□ -1.66
PRPF39-209ENST00000556353 C1QTNF8P60827 252 aa4.67□□□□□ -1.66
PRPF39-209ENST00000556353 GNB1P62873 340 aa4.67□□□□□ -1.66
PRPF39-209ENST00000556353 PDE1CQ14123 709 aaPredicted RBP4.67□□□□□ -1.66
PRPF39-209ENST00000556353 CDONQ4KMG0 1287 aa4.67□□□□□ -1.66
PRPF39-209ENST00000556353 ZC2HC1BQ5TFG8 222 aa4.67□□□□□ -1.66
PRPF39-209ENST00000556353 APLFQ8IW19 511 aaPredicted RBP4.67□□□□□ -1.66
PRPF39-209ENST00000556353 RDM1Q8NG50 284 aa4.67□□□□□ -1.66
PRPF39-209ENST00000556353 FCAMRQ8WWV6 532 aa4.67□□□□□ -1.66
PRPF39-209ENST00000556353 SMARCE1Q969G3 411 aa4.67□□□□□ -1.66
PRPF39-209ENST00000556353 LRR1Q96L50 414 aa4.67□□□□□ -1.66
PRPF39-209ENST00000556353 BICC1Q9H694 974 aaKnown RBP4.67□□□□□ -1.66
PRPF39-209ENST00000556353 TMOD3Q9NYL9 352 aa4.67□□□□□ -1.66
PRPF39-209ENST00000556353 UBA2Q9UBT2 640 aaPredicted RBP4.67□□□□□ -1.66
PRPF39-209ENST00000556353 C2CD2Q9Y426 696 aa4.67□□□□□ -1.66
PRPF39-209ENST00000556353 LAMB2P55268 1798 aa4.67□□□□□ -1.66
PRPF39-209ENST00000556353 BRCA2P51587 3418 aa4.66□□□□□ -1.66
PRPF39-209ENST00000556353 CARMIL3Q8ND23 1372 aa4.66□□□□□ -1.66
PRPF39-209ENST00000556353 HTTP42858 3142 aa4.66□□□□□ -1.66
PRPF39-209ENST00000556353 A0A1W2PPI3 338 aa4.66□□□□□ -1.66
PRPF39-209ENST00000556353 TMEM178BH3BS89 294 aa4.66□□□□□ -1.66
PRPF39-209ENST00000556353 JRKO75564 520 aa4.66□□□□□ -1.66
PRPF39-209ENST00000556353 SEC14L2O76054 403 aa4.66□□□□□ -1.66
PRPF39-209ENST00000556353 MMP10P09238 476 aa4.66□□□□□ -1.66
PRPF39-209ENST00000556353 ERVK-10P10266 1014 aa4.66□□□□□ -1.66
PRPF39-209ENST00000556353 KRT5P13647 590 aa4.66□□□□□ -1.66
PRPF39-209ENST00000556353 NR2C2P49116 596 aa4.66□□□□□ -1.66
PRPF39-209ENST00000556353 F2RL1P55085 397 aa4.66□□□□□ -1.66
PRPF39-209ENST00000556353 CDC16Q13042 620 aa4.66□□□□□ -1.66
PRPF39-209ENST00000556353 FRG1Q14331 258 aaKnown RBP4.66□□□□□ -1.66
PRPF39-209ENST00000556353 DHX8Q14562 1220 aaKnown RBP4.66□□□□□ -1.66
PRPF39-209ENST00000556353 KIR2DS3Q14952 304 aa4.66□□□□□ -1.66
PRPF39-209ENST00000556353 CCNG2Q16589 344 aa4.66□□□□□ -1.66
PRPF39-209ENST00000556353 DPCR1Q3MIW9 517 aa4.66□□□□□ -1.66
PRPF39-209ENST00000556353 RBMS3Q6XE24 437 aaKnown RBP4.66□□□□□ -1.66
PRPF39-209ENST00000556353 ZNF497Q6ZNH5 498 aa4.66□□□□□ -1.66
PRPF39-209ENST00000556353 CNTROBQ8N137 903 aa4.66□□□□□ -1.66
PRPF39-209ENST00000556353 RBM15BQ8NDT2 890 aaKnown RBP4.66□□□□□ -1.66
PRPF39-209ENST00000556353 MYRIPQ8NFW9 859 aa4.66□□□□□ -1.66
PRPF39-209ENST00000556353 TRIM58Q8NG06 486 aa4.66□□□□□ -1.66
PRPF39-209ENST00000556353 OR1J2Q8NGS2 313 aa4.66□□□□□ -1.66
PRPF39-209ENST00000556353 STRA6Q9BX79 667 aa4.66□□□□□ -1.66
PRPF39-209ENST00000556353 SAGE1Q9NXZ1 904 aa4.66□□□□□ -1.66
PRPF39-209ENST00000556353 TAS2R10Q9NYW0 307 aa4.66□□□□□ -1.66
PRPF39-209ENST00000556353 ANKRD36CQ5JPF3 1778 aa4.65□□□□□ -1.66
PRPF39-209ENST00000556353 EIF4E1BA6NMX2 242 aaKnown RBP4.65□□□□□ -1.67
PRPF39-209ENST00000556353 PAGE4O60829 102 aa4.65□□□□□ -1.67
PRPF39-209ENST00000556353 HOXC8P31273 242 aa4.65□□□□□ -1.67
PRPF39-209ENST00000556353 ELF1P32519 619 aa4.65□□□□□ -1.67
PRPF39-209ENST00000556353 PRCPP42785 496 aa4.65□□□□□ -1.67
PRPF39-209ENST00000556353 TUBP50607 506 aa4.65□□□□□ -1.67
PRPF39-209ENST00000556353 OLR1P78380 273 aa4.65□□□□□ -1.67
PRPF39-209ENST00000556353 PNLIPRP3Q17RR3 467 aa4.65□□□□□ -1.67
PRPF39-209ENST00000556353 ZC2HC1CQ53FD0 456 aaPredicted RBP4.65□□□□□ -1.67
PRPF39-209ENST00000556353 ASPRV1Q53RT3 343 aa4.65□□□□□ -1.67
PRPF39-209ENST00000556353 LCN10Q6JVE6 187 aa4.65□□□□□ -1.67
PRPF39-209ENST00000556353 ZNF530Q6P9A1 599 aaPredicted RBP4.65□□□□□ -1.67
PRPF39-209ENST00000556353 LONP2Q86WA8 852 aa4.65□□□□□ -1.67
PRPF39-209ENST00000556353 DBF4BQ8NFT6 615 aa4.65□□□□□ -1.67
PRPF39-209ENST00000556353 HCAR2Q8TDS4 363 aa4.65□□□□□ -1.67
PRPF39-209ENST00000556353 PPP4R1Q8TF05 950 aa4.65□□□□□ -1.67
PRPF39-209ENST00000556353 TMEM190Q8WZ59 177 aa4.65□□□□□ -1.67
PRPF39-209ENST00000556353 FAM149B1Q96BN6 582 aa4.65□□□□□ -1.67
PRPF39-209ENST00000556353 MMABQ96EY8 250 aaPredicted RBP4.65□□□□□ -1.67
PRPF39-209ENST00000556353 OXNAD1Q96HP4 312 aaPredicted RBP4.65□□□□□ -1.67
PRPF39-209ENST00000556353 PIP5K1AQ99755 562 aa4.65□□□□□ -1.67
PRPF39-209ENST00000556353 ASCL2Q99929 193 aa4.65□□□□□ -1.67
PRPF39-209ENST00000556353 TRPC7Q9HCX4 862 aa4.65□□□□□ -1.67
PRPF39-209ENST00000556353 KLHL9Q9P2J3 617 aa4.65□□□□□ -1.67
PRPF39-209ENST00000556353 CNOT8Q9UFF9 292 aaKnown RBP4.65□□□□□ -1.67
PRPF39-209ENST00000556353 NAP1L2Q9ULW6 460 aaPredicted RBP4.65□□□□□ -1.67
PRPF39-209ENST00000556353 MKI67P46013 3256 aaKnown RBP4.65□□□□□ -1.67
PRPF39-209ENST00000556353 IGKV3D-20A0A0C4DH25 116 aa4.64□□□□□ -1.67
PRPF39-209ENST00000556353 A0A0G2JNG1 304 aa4.64□□□□□ -1.67
PRPF39-209ENST00000556353 HMGB1P1B2RPK0 211 aaPredicted RBP4.64□□□□□ -1.67
PRPF39-209ENST00000556353 CLIC2O15247 247 aa4.64□□□□□ -1.67
PRPF39-209ENST00000556353 ZNF500O60304 480 aaPredicted RBP4.64□□□□□ -1.67
PRPF39-209ENST00000556353 IGLV1-44P01699 117 aa4.64□□□□□ -1.67
PRPF39-209ENST00000556353 NR3C1P04150 777 aa4.64□□□□□ -1.67
PRPF39-209ENST00000556353 UBL4AP11441 157 aa4.64□□□□□ -1.67
PRPF39-209ENST00000556353 PRELPP51888 382 aa4.64□□□□□ -1.67
PRPF39-209ENST00000556353 RPL7AP62424 266 aaKnown RBP4.64□□□□□ -1.67
PRPF39-209ENST00000556353 ZBED6P86452 979 aa4.64□□□□□ -1.67
PRPF39-209ENST00000556353 MBTD1Q05BQ5 628 aa4.64□□□□□ -1.67
PRPF39-209ENST00000556353 KIR2DS5Q14953 304 aa4.64□□□□□ -1.67
PRPF39-209ENST00000556353 ZRSR2Q15696 482 aaKnown RBP4.64□□□□□ -1.67
PRPF39-209ENST00000556353 ZNF805Q5CZA5 627 aa4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms