RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 RNF170Q96K19 258 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 PPM1MQ96MI6 270 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 CHCHD6Q9BRQ6 235 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 ADPGKQ9BRR6 497 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 BCO2Q9BYV7 579 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 CXCL16Q9H2A7 254 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 KCNN2Q9H2S1 579 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 NIPAL2Q9H841 368 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 NMRAL1Q9HBL8 299 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 SNX15Q9NRS6 342 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 MTPAPQ9NVV4 582 aaKnown RBP eCLIP5.19□□□□□ -1.58
USP28-213ENST00000544967 B3GNT2Q9NY97 397 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 KLQ9UEF7 1012 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 PDE10AQ9Y233 779 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 CAB39Q9Y376 341 aaPredicted RBP5.19□□□□□ -1.58
USP28-213ENST00000544967 KMT2EQ8IZD2 1858 aa5.19□□□□□ -1.58
USP28-213ENST00000544967 SLC12A8A0AV02 714 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 CCDC78A2IDD5 438 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 AGAP5A6NIR3 686 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 MEIS3P2A8K0S8 358 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 ZBBXA8MT70 800 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 INO80B-WBP1J3KQ70 363 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 MRASO14807 208 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 MDM4O15151 490 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 CFLARO15519 480 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 UGT2B17O75795 530 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 CNOT4O95628 575 aaKnown RBP5.18□□□□□ -1.58
USP28-213ENST00000544967 TCF4P15884 667 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 ATP6V1B2P21281 511 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 ERP29P30040 261 aaKnown RBP5.18□□□□□ -1.58
USP28-213ENST00000544967 HOXA9P31269 272 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 ATP5OP48047 213 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 CLK3P49761 638 aaKnown RBP5.18□□□□□ -1.58
USP28-213ENST00000544967 UGT2B15P54855 530 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 B2MP61769 119 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 CSNK2BP67870 215 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 SOX4Q06945 474 aaPredicted RBP5.18□□□□□ -1.58
USP28-213ENST00000544967 INCA1Q0VD86 236 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 PEX6Q13608 980 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 STILQ15468 1287 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 ZFP69Q49AA0 526 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 ESCO2Q56NI9 601 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 GLRA4Q5JXX5 417 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 C6orf141Q5SZD1 244 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 ATAD3CQ5T2N8 411 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 DEFB128Q7Z7B8 93 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 ADCK1Q86TW2 530 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 SLC9B2Q86UD5 537 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 CPNE9Q8IYJ1 553 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 TCTE3Q8IZS6 198 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 ZNF619Q8N2I2 560 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 KDM1BQ8NB78 822 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 RDH13Q8NBN7 331 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 LHFPL5Q8TAF8 219 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 SPPL3Q8TCT6 385 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 PROX1Q92786 737 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 RPL3LQ92901 407 aaKnown RBP5.18□□□□□ -1.58
USP28-213ENST00000544967 USP13Q92995 863 aaPredicted RBP5.18□□□□□ -1.58
USP28-213ENST00000544967 TMCO6Q96DC7 493 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 MCRS1Q96EZ8 462 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 RPRD1AQ96P16 312 aaPredicted RBP5.18□□□□□ -1.58
USP28-213ENST00000544967 QKIQ96PU8 341 aaKnown RBP eCLIP5.18□□□□□ -1.58
USP28-213ENST00000544967 C11orf84Q9BUA3 381 aaPredicted RBP5.18□□□□□ -1.58
USP28-213ENST00000544967 IKZF4Q9H2S9 585 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 PCIF1Q9H4Z3 704 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 MRPL39Q9NYK5 338 aaKnown RBP5.18□□□□□ -1.58
USP28-213ENST00000544967 TXNDC16Q9P2K2 825 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 SIX4Q9UIU6 781 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 UBQLN1Q9UMX0 589 aaKnown RBP5.18□□□□□ -1.58
USP28-213ENST00000544967 RBMX2Q9Y388 322 aaKnown RBP5.18□□□□□ -1.58
USP28-213ENST00000544967 PCDHGB2Q9Y5G2 931 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 PCDHGA3Q9Y5H0 932 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 MUC22E2RYF6 1773 aaPredicted RBP5.18□□□□□ -1.58
USP28-213ENST00000544967 A0A1B0GVC2 190 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 METTL15A6NJ78 407 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 H0Y858 1186 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 APOL1O14791 398 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 SLC16A6O15403 523 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 GABBR2O75899 941 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 MICAL2O94851 1124 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 SEC24AO95486 1093 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 F9P00740 461 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 SOD2P04179 222 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 CTSAP10619 480 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 ITGAMP11215 1152 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 IL1RNP18510 177 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 HTR1EP28566 365 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 PNPLA4P41247 253 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 RPL34P49207 117 aaKnown RBP5.18□□□□□ -1.58
USP28-213ENST00000544967 ITKQ08881 620 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 TAF5Q15542 800 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 PGS1Q32NB8 556 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 ZBTB41Q5SVQ8 909 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 SLC8B1Q6J4K2 584 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 TRMT10BQ6PF06 316 aaKnown RBP5.18□□□□□ -1.58
USP28-213ENST00000544967 GLB1LQ6UWU2 654 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 NAPRTQ6XQN6 538 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 SPATC1Q76KD6 591 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 LRRTM3Q86VH5 581 aa5.18□□□□□ -1.58
USP28-213ENST00000544967 FAM9CQ8IZT9 166 aa5.18□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms