RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 SEC14L1Q92503 715 aa7.72□□□□□ -1.17
VPS13D-211ENST00000543710 MRPL38Q96DV4 380 aaKnown RBP7.72□□□□□ -1.17
VPS13D-211ENST00000543710 C8orf48Q96LL4 319 aa7.72□□□□□ -1.17
VPS13D-211ENST00000543710 C5orf34Q96MH7 638 aa7.72□□□□□ -1.17
VPS13D-211ENST00000543710 CSPG4P5Q96PW8 444 aa7.72□□□□□ -1.17
VPS13D-211ENST00000543710 BRINP2Q9C0B6 783 aa7.72□□□□□ -1.17
VPS13D-211ENST00000543710 TMEM27Q9HBJ8 222 aa7.72□□□□□ -1.17
VPS13D-211ENST00000543710 TMEM9BQ9NQ34 198 aa7.72□□□□□ -1.17
VPS13D-211ENST00000543710 NFKBIL1Q9UBC1 381 aaPredicted RBP7.72□□□□□ -1.17
VPS13D-211ENST00000543710 PCDHGB5Q9Y5G0 923 aa7.72□□□□□ -1.17
VPS13D-211ENST00000543710 PCDHGB2Q9Y5G2 931 aa7.72□□□□□ -1.17
VPS13D-211ENST00000543710 PCDHA2Q9Y5H9 948 aa7.72□□□□□ -1.17
VPS13D-211ENST00000543710 TFEBP19484 476 aa7.71□□□□□ -1.17
VPS13D-211ENST00000543710 ENDOUP21128 410 aaKnown RBP7.71□□□□□ -1.17
VPS13D-211ENST00000543710 CMPK1P30085 196 aa7.71□□□□□ -1.17
VPS13D-211ENST00000543710 SLC7A1P30825 629 aa7.71□□□□□ -1.17
VPS13D-211ENST00000543710 PSMD8P48556 350 aa7.71□□□□□ -1.17
VPS13D-211ENST00000543710 STXBP1P61764 594 aaKnown RBP7.71□□□□□ -1.17
VPS13D-211ENST00000543710 PWP1Q13610 501 aa7.71□□□□□ -1.17
VPS13D-211ENST00000543710 SLC5A9Q2M3M2 681 aa7.71□□□□□ -1.17
VPS13D-211ENST00000543710 SPIN4Q56A73 249 aa7.71□□□□□ -1.17
VPS13D-211ENST00000543710 XKR6Q5GH73 641 aa7.71□□□□□ -1.17
VPS13D-211ENST00000543710 ARMC8Q8IUR7 673 aa7.71□□□□□ -1.17
VPS13D-211ENST00000543710 BANPQ8N9N5 519 aa7.71□□□□□ -1.17
VPS13D-211ENST00000543710 FAM13CQ8NE31 585 aa7.71□□□□□ -1.17
VPS13D-211ENST00000543710 HAVCR2Q8TDQ0 301 aa7.71□□□□□ -1.17
VPS13D-211ENST00000543710 AURKBQ96GD4 344 aaPredicted RBP7.71□□□□□ -1.17
VPS13D-211ENST00000543710 RANBP9Q96S59 729 aa7.71□□□□□ -1.17
VPS13D-211ENST00000543710 ACBD6Q9BR61 282 aa7.71□□□□□ -1.17
VPS13D-211ENST00000543710 EPB41L1Q9H4G0 881 aa7.71□□□□□ -1.17
VPS13D-211ENST00000543710 ERVK-11Q9UQG0 969 aa7.71□□□□□ -1.17
VPS13D-211ENST00000543710 MAGED1Q9Y5V3 778 aaPredicted RBP7.71□□□□□ -1.17
VPS13D-211ENST00000543710 SH3PXD2BA1X283 911 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 E2F3O00716 465 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 ORC5O43913 435 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 CBX6O95503 412 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 SERPINA1P01009 418 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 TNFP01375 233 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 CHRNGP07510 517 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 ANXA8P13928 327 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 PBX3P40426 434 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 PPP3CAQ08209 521 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 AMHR2Q16671 573 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 DOK6Q6PKX4 331 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 PEX5LQ8IYB4 626 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 PLD6Q8N2A8 252 aaKnown RBP7.71□□□□□ -1.18
VPS13D-211ENST00000543710 MAGEE2Q8TD90 523 aaPredicted RBP7.71□□□□□ -1.18
VPS13D-211ENST00000543710 ZNF514Q96K75 400 aaPredicted RBP7.71□□□□□ -1.18
VPS13D-211ENST00000543710 SNX27Q96L92 541 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 SP140LQ9H930 580 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 KLHL1Q9NR64 748 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 CCDC167Q9P0B6 97 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 POFUT2Q9Y2G5 429 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 KCNE2Q9Y6J6 123 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 KRT36O76013 467 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 NDST3O95803 873 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 C8BP07358 591 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 MMP8P22894 467 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 POU1F1P28069 291 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 PBLDP30039 288 aaPredicted RBP7.71□□□□□ -1.18
VPS13D-211ENST00000543710 CDKN2BP42772 138 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 CCR10P46092 362 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 KCNJ5P48544 419 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 GRB14Q14449 540 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 AP5B1Q2VPB7 878 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 MED27Q6P2C8 311 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 VITQ6UXI7 678 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 SLCO6A1Q86UG4 719 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 TMEM139Q8IV31 216 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 PIH1D2Q8WWB5 315 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 CREB3L1Q96BA8 519 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 ASB9Q96DX5 294 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 OR52E6Q96RD3 313 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 COMMD4Q9H0A8 199 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 CDT1Q9H211 546 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 CAB39LQ9H9S4 337 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 SEMA4BQ9NPR2 832 aaPredicted RBP7.71□□□□□ -1.18
VPS13D-211ENST00000543710 NEDD8-MDP1E9PL57 170 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 RPS9P46781 194 aaKnown RBP7.71□□□□□ -1.18
VPS13D-211ENST00000543710 CAPZA1P52907 286 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 CAPSQ13938 189 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 ELOCQ15369 112 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 IL17AQ16552 155 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 RAVER1Q8IY67 606 aaKnown RBP7.71□□□□□ -1.18
VPS13D-211ENST00000543710 FBXL6Q8N531 539 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 UBASH3BQ8TF42 649 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 TWIST2Q8WVJ9 160 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 PHF21BQ96EK2 531 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 MARK4Q96L34 752 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 CYP2S1Q96SQ9 504 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 SLC22A4Q9H015 551 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 ASB8Q9H765 288 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 PIAS3Q9Y6X2 628 aa7.71□□□□□ -1.18
VPS13D-211ENST00000543710 FAM221BA6H8Z2 402 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 RIIAD1A6NNX1 92 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 CAPN14A8MX76 684 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 H0YAE9 185 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 SPATA31C1P0DKV0 1188 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 GTF2H2Q13888 395 aa7.7□□□□□ -1.18
VPS13D-211ENST00000543710 PUM1Q14671 1186 aaKnown RBP eCLIP7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms