RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 PAF1Q8N7H5 531 aa13.53□□□□□ -0.24
RTN3-210ENST00000540798 PROKR1Q8TCW9 393 aa13.53□□□□□ -0.24
RTN3-210ENST00000540798 ATP6V1E2Q96A05 226 aa13.53□□□□□ -0.24
RTN3-210ENST00000540798 RMI1Q9H9A7 625 aa13.53□□□□□ -0.24
RTN3-210ENST00000540798 NFKBIL1Q9UBC1 381 aaPredicted RBP13.53□□□□□ -0.24
RTN3-210ENST00000540798 ZMYM5Q9UJ78 669 aa13.53□□□□□ -0.24
RTN3-210ENST00000540798 ANKRD28O15084 1053 aa13.53□□□□□ -0.24
RTN3-210ENST00000540798 DENRO43583 198 aaKnown RBP13.53□□□□□ -0.24
RTN3-210ENST00000540798 ZNF30P17039 623 aa13.53□□□□□ -0.24
RTN3-210ENST00000540798 AOAHP28039 575 aa13.53□□□□□ -0.24
RTN3-210ENST00000540798 CCR7P32248 378 aa13.53□□□□□ -0.24
RTN3-210ENST00000540798 GGT5P36269 586 aa13.53□□□□□ -0.24
RTN3-210ENST00000540798 ATXN3P54252 364 aaPredicted RBP13.53□□□□□ -0.24
RTN3-210ENST00000540798 DCDC1P59894 354 aa13.53□□□□□ -0.24
RTN3-210ENST00000540798 POLR2LP62875 67 aaKnown RBP13.53□□□□□ -0.24
RTN3-210ENST00000540798 YBX1P67809 324 aaKnown RBP13.53□□□□□ -0.24
RTN3-210ENST00000540798 CDKL1Q00532 357 aa13.53□□□□□ -0.24
RTN3-210ENST00000540798 CAMK1Q14012 370 aa13.53□□□□□ -0.24
RTN3-210ENST00000540798 DCBLD1Q8N8Z6 715 aa13.53□□□□□ -0.24
RTN3-210ENST00000540798 TMEM125Q96AQ2 219 aa13.53□□□□□ -0.24
RTN3-210ENST00000540798 SLC45A3Q96JT2 553 aa13.53□□□□□ -0.24
RTN3-210ENST00000540798 TRPS1Q9UHF7 1281 aa13.53□□□□□ -0.24
RTN3-210ENST00000540798 TSR3Q9UJK0 312 aaKnown RBP13.53□□□□□ -0.24
RTN3-210ENST00000540798 AP4S1Q9Y587 144 aa13.53□□□□□ -0.24
RTN3-210ENST00000540798 C9JVG2 144 aa13.52□□□□□ -0.24
RTN3-210ENST00000540798 C5orf67F2Z3F1 127 aa13.52□□□□□ -0.24
RTN3-210ENST00000540798 NPPAP01160 153 aa13.52□□□□□ -0.24
RTN3-210ENST00000540798 LINGO3P0C6S8 592 aa13.52□□□□□ -0.24
RTN3-210ENST00000540798 POLR2JP52435 117 aaKnown RBP13.52□□□□□ -0.24
RTN3-210ENST00000540798 KCNK10P57789 538 aa13.52□□□□□ -0.24
RTN3-210ENST00000540798 FPGSQ05932 587 aa13.52□□□□□ -0.24
RTN3-210ENST00000540798 ABRAXAS2Q15018 415 aa13.52□□□□□ -0.24
RTN3-210ENST00000540798 SLC30A9Q6PML9 568 aa13.52□□□□□ -0.24
RTN3-210ENST00000540798 ZFAND4Q86XD8 727 aa13.52□□□□□ -0.24
RTN3-210ENST00000540798 RASGRP3Q8IV61 690 aa13.52□□□□□ -0.24
RTN3-210ENST00000540798 GOLM1Q8NBJ4 401 aa13.52□□□□□ -0.24
RTN3-210ENST00000540798 ICA1LQ8NDH6 482 aa13.52□□□□□ -0.24
RTN3-210ENST00000540798 ZSWIM3Q96MP5 696 aa13.52□□□□□ -0.24
RTN3-210ENST00000540798 VCXQ9H320 206 aa13.52□□□□□ -0.24
RTN3-210ENST00000540798 ACTL8Q9H568 366 aa13.52□□□□□ -0.24
RTN3-210ENST00000540798 GMPR2Q9P2T1 348 aaKnown RBP13.52□□□□□ -0.24
RTN3-210ENST00000540798 SCOCQ9UIL1 159 aa13.52□□□□□ -0.24
RTN3-210ENST00000540798 PCDHGA4Q9Y5G9 962 aa13.52□□□□□ -0.24
RTN3-210ENST00000540798 HCFC2Q9Y5Z7 792 aa13.52□□□□□ -0.24
RTN3-210ENST00000540798 MUC22E2RYF6 1773 aaPredicted RBP13.52□□□□□ -0.25
RTN3-210ENST00000540798 DYTNA2CJ06 578 aa13.52□□□□□ -0.25
RTN3-210ENST00000540798 K7EPI3 171 aa13.52□□□□□ -0.25
RTN3-210ENST00000540798 SYNCRIPO60506 623 aaKnown RBP13.52□□□□□ -0.25
RTN3-210ENST00000540798 DNAJA2O60884 412 aa13.52□□□□□ -0.25
RTN3-210ENST00000540798 WDR47O94967 919 aa13.52□□□□□ -0.25
RTN3-210ENST00000540798 GUCA1CO95843 209 aa13.52□□□□□ -0.25
RTN3-210ENST00000540798 BNIP2Q12982 314 aa13.52□□□□□ -0.25
RTN3-210ENST00000540798 GRM2Q14416 872 aa13.52□□□□□ -0.25
RTN3-210ENST00000540798 GRAMD1BQ3KR37 738 aa13.52□□□□□ -0.25
RTN3-210ENST00000540798 FBXL19Q6PCT2 694 aa13.52□□□□□ -0.25
RTN3-210ENST00000540798 IL27RAQ6UWB1 636 aa13.52□□□□□ -0.25
RTN3-210ENST00000540798 DPP10Q8N608 796 aa13.52□□□□□ -0.25
RTN3-210ENST00000540798 FNDC5Q8NAU1 212 aa13.52□□□□□ -0.25
RTN3-210ENST00000540798 PHOSPHO2Q8TCD6 241 aa13.52□□□□□ -0.25
RTN3-210ENST00000540798 BADQ92934 168 aa13.52□□□□□ -0.25
RTN3-210ENST00000540798 PBXIP1Q96AQ6 731 aa13.52□□□□□ -0.25
RTN3-210ENST00000540798 ARMC1Q9NVT9 282 aa13.52□□□□□ -0.25
RTN3-210ENST00000540798 MBD1Q9UIS9 605 aaPredicted RBP13.52□□□□□ -0.25
RTN3-210ENST00000540798 NUAK1O60285 661 aa13.51□□□□□ -0.25
RTN3-210ENST00000540798 ENO2P09104 434 aaPredicted RBP13.51□□□□□ -0.25
RTN3-210ENST00000540798 EPCAMP16422 314 aa13.51□□□□□ -0.25
RTN3-210ENST00000540798 ATP6V1B2P21281 511 aa13.51□□□□□ -0.25
RTN3-210ENST00000540798 TPP2P29144 1249 aaPredicted RBP13.51□□□□□ -0.25
RTN3-210ENST00000540798 VIPR1P32241 457 aa13.51□□□□□ -0.25
RTN3-210ENST00000540798 FXNQ16595 210 aa13.51□□□□□ -0.25
RTN3-210ENST00000540798 PAGE3Q5JUK9 113 aa13.51□□□□□ -0.25
RTN3-210ENST00000540798 LCN8Q6JVE9 175 aa13.51□□□□□ -0.25
RTN3-210ENST00000540798 TRIM46Q7Z4K8 759 aa13.51□□□□□ -0.25
RTN3-210ENST00000540798 MILR1Q7Z6M3 343 aa13.51□□□□□ -0.25
RTN3-210ENST00000540798 DHFR2Q86XF0 187 aa13.51□□□□□ -0.25
RTN3-210ENST00000540798 FAM83CQ9BQN1 747 aa13.51□□□□□ -0.25
RTN3-210ENST00000540798 HEPHQ9BQS7 1158 aa13.51□□□□□ -0.25
RTN3-210ENST00000540798 C1orf50Q9BV19 199 aa13.51□□□□□ -0.25
RTN3-210ENST00000540798 OPTCQ9UBM4 332 aa13.51□□□□□ -0.25
RTN3-210ENST00000540798 LEF1Q9UJU2 399 aaPredicted RBP13.51□□□□□ -0.25
RTN3-210ENST00000540798 BLOC1S6Q9UL45 172 aa13.51□□□□□ -0.25
RTN3-210ENST00000540798 RAB26Q9ULW5 256 aa13.51□□□□□ -0.25
RTN3-210ENST00000540798 AQP12BA6NM10 295 aa13.51□□□□□ -0.25
RTN3-210ENST00000540798 H0YJX3 145 aa13.51□□□□□ -0.25
RTN3-210ENST00000540798 BNIP3LO60238 219 aa13.51□□□□□ -0.25
RTN3-210ENST00000540798 OR56A5P0C7T3 313 aa13.51□□□□□ -0.25
RTN3-210ENST00000540798 EBLN1P0CF75 366 aa13.51□□□□□ -0.25
RTN3-210ENST00000540798 MPC1LP0DKB6 136 aa13.51□□□□□ -0.25
RTN3-210ENST00000540798 HSPA8P11142 646 aaKnown RBP13.51□□□□□ -0.25
RTN3-210ENST00000540798 MED21Q13503 144 aa13.51□□□□□ -0.25
RTN3-210ENST00000540798 UBE2Q1Q7Z7E8 422 aa13.51□□□□□ -0.25
RTN3-210ENST00000540798 PTRH1Q86Y79 214 aaKnown RBP13.51□□□□□ -0.25
RTN3-210ENST00000540798 GALNT13Q8IUC8 556 aa13.51□□□□□ -0.25
RTN3-210ENST00000540798 AQP12AQ8IXF9 295 aa13.51□□□□□ -0.25
RTN3-210ENST00000540798 MARVELD2Q8N4S9 558 aa13.51□□□□□ -0.25
RTN3-210ENST00000540798 KIAA1958Q8N8K9 716 aa13.51□□□□□ -0.25
RTN3-210ENST00000540798 OR2T34Q8NGX1 318 aa13.51□□□□□ -0.25
RTN3-210ENST00000540798 OR2T3Q8NH03 318 aa13.51□□□□□ -0.25
RTN3-210ENST00000540798 HERVK_113Q902F9 699 aa13.51□□□□□ -0.25
RTN3-210ENST00000540798 VPS33AQ96AX1 596 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms