RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 ZNF280AP59817 542 aaPredicted RBP5.43□□□□□ -1.54
CD44-236ENST00000533222 ACTR3P61158 418 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 PSMC6P62333 389 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 TNNC1P63316 161 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 ARF5P84085 180 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 TNFAIP2Q03169 654 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 ZNF33AQ06730 810 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 PPP3CAQ08209 521 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 BST2Q10589 180 aaKnown RBP5.43□□□□□ -1.54
CD44-236ENST00000533222 SEMA3BQ13214 749 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 HNF4GQ14541 408 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 PUM1Q14671 1186 aaKnown RBP eCLIP5.43□□□□□ -1.54
CD44-236ENST00000533222 EMC2Q15006 297 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 PON3Q15166 354 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 ZMYND11Q15326 602 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 CHRNA6Q15825 494 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 CYP2A13Q16696 494 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 GFOD2Q3B7J2 385 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 MAJINQ3KP22 176 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 MMEL1Q495T6 779 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 LDLRAP1Q5SW96 308 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 DDI2Q5TDH0 399 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 ATF7IP2Q5U623 682 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 KRT79Q5XKE5 535 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 ATG16L1Q676U5 607 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 TIGD3Q6B0B8 471 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 RAB12Q6IQ22 244 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 ZNF544Q6NX49 715 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 RAD9BQ6WBX8 426 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 LDHAL6AQ6ZMR3 332 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 PLEKHG7Q6ZR37 379 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 SLC16A12Q6ZSM3 486 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 PTCHD4Q6ZW05 846 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 CYB5R4Q7L1T6 521 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 PLEKHH3Q7Z736 793 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 NT5DC3Q86UY8 548 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 KBTBD6Q86V97 674 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 MICU3Q86XE3 530 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 ARHGEF19Q8IW93 802 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 SRRM1Q8IYB3 904 aaKnown RBP5.43□□□□□ -1.54
CD44-236ENST00000533222 TCEAL8Q8IYN2 117 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 GPR135Q8IZ08 494 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 PDIK1LQ8N165 341 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 CYP4Z2PQ8N1L4 340 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 MPP5Q8N3R9 675 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 OR2I1PQ8NGU4 316 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 OR5H6Q8NGV6 325 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 RNASE11Q8TAA1 199 aaKnown RBP5.43□□□□□ -1.54
CD44-236ENST00000533222 CEP76Q8TAP6 659 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 MAGEE2Q8TD90 523 aaPredicted RBP5.43□□□□□ -1.54
CD44-236ENST00000533222 ZNF384Q8TF68 577 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 CKAP2Q8WWK9 683 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 AKAP1Q92667 903 aaKnown RBP eCLIP5.43□□□□□ -1.54
CD44-236ENST00000533222 KRT35Q92764 455 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 HDAC2Q92769 488 aaKnown RBP5.43□□□□□ -1.54
CD44-236ENST00000533222 TCEAL3Q969E4 200 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 TMIGD2Q96BF3 282 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 TESCQ96BS2 214 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 FAM122AQ96E09 287 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 ZNF845Q96IR2 970 aaPredicted RBP5.43□□□□□ -1.54
CD44-236ENST00000533222 MAGEB18Q96M61 343 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 CAMK1GQ96NX5 476 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 TBCBQ99426 244 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 NEU1Q99519 415 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 PKP4Q99569 1192 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 CITED2Q99967 270 aaPredicted RBP5.43□□□□□ -1.54
CD44-236ENST00000533222 GDF15Q99988 308 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 FAM213AQ9BRX8 229 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 GSDMCQ9BYG8 508 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 YTHDF1Q9BYJ9 559 aaKnown RBP5.43□□□□□ -1.54
CD44-236ENST00000533222 USP44Q9H0E7 712 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 IKZF4Q9H2S9 585 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 NT5MQ9NPB1 228 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 TLR9Q9NR96 1032 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 ACOXLQ9NUZ1 547 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 SAGE1Q9NXZ1 904 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 GLTPQ9NZD2 209 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 VSX1Q9NZR4 365 aaPredicted RBP5.43□□□□□ -1.54
CD44-236ENST00000533222 BTNL2Q9UIR0 455 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 OAZ3Q9UMX2 235 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 MGAT4BQ9UQ53 548 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 GDAQ9Y2T3 454 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 GRIP1Q9Y3R0 1128 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 HYOU1Q9Y4L1 999 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 PCDHA1Q9Y5I3 950 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 ZFP37Q9Y6Q3 630 aaPredicted RBP5.43□□□□□ -1.54
CD44-236ENST00000533222 ADCY10Q96PN6 1610 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 XDHP47989 1333 aa5.43□□□□□ -1.54
CD44-236ENST00000533222 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP5.42□□□□□ -1.54
CD44-236ENST00000533222 A0A0U1RQV5 110 aa5.42□□□□□ -1.54
CD44-236ENST00000533222 LRRC14BA6NHZ5 514 aa5.42□□□□□ -1.54
CD44-236ENST00000533222 PCP4L1A6NKN8 68 aa5.42□□□□□ -1.54
CD44-236ENST00000533222 A8MXE2 369 aa5.42□□□□□ -1.54
CD44-236ENST00000533222 NT5C1B-RDH14C9J2C7 533 aa5.42□□□□□ -1.54
CD44-236ENST00000533222 CCDC188H7C350 402 aa5.42□□□□□ -1.54
CD44-236ENST00000533222 OGTO15294 1046 aa5.42□□□□□ -1.54
CD44-236ENST00000533222 TM9SF1O15321 606 aa5.42□□□□□ -1.54
CD44-236ENST00000533222 CA12O43570 354 aa5.42□□□□□ -1.54
CD44-236ENST00000533222 CALUO43852 315 aaPredicted RBP5.42□□□□□ -1.54
CD44-236ENST00000533222 CACNG3O60359 315 aa5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms