RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 AAR2Q9Y312 384 aaKnown RBP11.05□□□□□ -0.64
VPS28-214ENST00000531032 PCDHGA9Q9Y5G4 932 aaKnown RBP11.05□□□□□ -0.64
VPS28-214ENST00000531032 HEBP2Q9Y5Z4 205 aa11.05□□□□□ -0.64
VPS28-214ENST00000531032 C17orf113A0A1B0GUU1 675 aa11.04□□□□□ -0.64
VPS28-214ENST00000531032 MATN2O00339 956 aa11.04□□□□□ -0.64
VPS28-214ENST00000531032 PJA2O43164 708 aa11.04□□□□□ -0.64
VPS28-214ENST00000531032 IPO7O95373 1038 aaKnown RBP11.04□□□□□ -0.64
VPS28-214ENST00000531032 CRTAMO95727 393 aa11.04□□□□□ -0.64
VPS28-214ENST00000531032 KLK3P07288 261 aaPredicted RBP11.04□□□□□ -0.64
VPS28-214ENST00000531032 RAB40ALP0C0E4 278 aa11.04□□□□□ -0.64
VPS28-214ENST00000531032 MSL3P1P0C860 447 aa11.04□□□□□ -0.64
VPS28-214ENST00000531032 RALBP11234 206 aa11.04□□□□□ -0.64
VPS28-214ENST00000531032 GP1BBP13224 206 aa11.04□□□□□ -0.64
VPS28-214ENST00000531032 POLR2CP19387 275 aaPredicted RBP11.04□□□□□ -0.64
VPS28-214ENST00000531032 PSMB4P28070 264 aa11.04□□□□□ -0.64
VPS28-214ENST00000531032 CTNNA1P35221 906 aaKnown RBP11.04□□□□□ -0.64
VPS28-214ENST00000531032 PTPN7P35236 360 aa11.04□□□□□ -0.64
VPS28-214ENST00000531032 RORAP35398 523 aa11.04□□□□□ -0.64
VPS28-214ENST00000531032 ARCN1P48444 511 aaKnown RBP11.04□□□□□ -0.64
VPS28-214ENST00000531032 GSDMDP57764 484 aa11.04□□□□□ -0.64
VPS28-214ENST00000531032 OTUD4Q01804 1114 aaKnown RBP11.04□□□□□ -0.64
VPS28-214ENST00000531032 ABRQ12979 859 aa11.04□□□□□ -0.64
VPS28-214ENST00000531032 PRKAA1Q13131 559 aa11.04□□□□□ -0.64
VPS28-214ENST00000531032 GSE1Q14687 1217 aa11.04□□□□□ -0.64
VPS28-214ENST00000531032 ZNF658BQ4V348 819 aaPredicted RBP11.04□□□□□ -0.64
VPS28-214ENST00000531032 ANKRD20A2Q5SQ80 823 aa11.04□□□□□ -0.64
VPS28-214ENST00000531032 PLEKHS1Q5SXH7 462 aa11.04□□□□□ -0.64
VPS28-214ENST00000531032 ANKRD20A1Q5TYW2 823 aa11.04□□□□□ -0.64
VPS28-214ENST00000531032 ANKRD20A3Q5VUR7 823 aa11.04□□□□□ -0.64
VPS28-214ENST00000531032 PAPD7Q5XG87 772 aaKnown RBP11.04□□□□□ -0.64
VPS28-214ENST00000531032 DENND5AQ6IQ26 1287 aa11.04□□□□□ -0.64
VPS28-214ENST00000531032 FBXO38Q6PIJ6 1188 aa11.04□□□□□ -0.64
VPS28-214ENST00000531032 CDKL3Q8IVW4 592 aaPredicted RBP11.04□□□□□ -0.64
VPS28-214ENST00000531032 CFAP206Q8IYR0 622 aa11.04□□□□□ -0.64
VPS28-214ENST00000531032 DSELQ8IZU8 1212 aa11.04□□□□□ -0.64
VPS28-214ENST00000531032 NXPE1Q8N323 547 aa11.04□□□□□ -0.64
VPS28-214ENST00000531032 TC2NQ8N9U0 490 aa11.04□□□□□ -0.64
VPS28-214ENST00000531032 OR4E2Q8NGC2 313 aa11.04□□□□□ -0.64
VPS28-214ENST00000531032 OR13C4Q8NGS5 318 aa11.04□□□□□ -0.64
VPS28-214ENST00000531032 ACTL9Q8TC94 416 aa11.04□□□□□ -0.64
VPS28-214ENST00000531032 ADAMTS17Q8TE56 1095 aa11.04□□□□□ -0.64
VPS28-214ENST00000531032 HEXDCQ8WVB3 486 aa11.04□□□□□ -0.64
VPS28-214ENST00000531032 CPT1BQ92523 772 aa11.04□□□□□ -0.64
VPS28-214ENST00000531032 MR1Q95460 341 aa11.04□□□□□ -0.64
VPS28-214ENST00000531032 DCUN1D1Q96GG9 259 aa11.04□□□□□ -0.64
VPS28-214ENST00000531032 PSMG3-AS1Q96PY0 264 aa11.04□□□□□ -0.64
VPS28-214ENST00000531032 APOL2Q9BQE5 337 aa11.04□□□□□ -0.64
VPS28-214ENST00000531032 FERMT1Q9BQL6 677 aa11.04□□□□□ -0.64
VPS28-214ENST00000531032 TLR10Q9BXR5 811 aa11.04□□□□□ -0.64
VPS28-214ENST00000531032 PITPNM3Q9BZ71 974 aa11.04□□□□□ -0.64
VPS28-214ENST00000531032 ING2Q9H160 280 aa11.04□□□□□ -0.64
VPS28-214ENST00000531032 CHST8Q9H2A9 424 aa11.04□□□□□ -0.64
VPS28-214ENST00000531032 ARNT2Q9HBZ2 717 aa11.04□□□□□ -0.64
VPS28-214ENST00000531032 C1GALT1Q9NS00 363 aa11.04□□□□□ -0.64
VPS28-214ENST00000531032 CRLS1Q9UJA2 301 aa11.04□□□□□ -0.64
VPS28-214ENST00000531032 TFR2Q9UP52 801 aa11.04□□□□□ -0.64
VPS28-214ENST00000531032 PCDHA13Q9Y5I0 950 aa11.04□□□□□ -0.64
VPS28-214ENST00000531032 TNRC6AQ8NDV7 1962 aaKnown RBP11.04□□□□□ -0.64
VPS28-214ENST00000531032 MED13Q9UHV7 2174 aa11.03□□□□□ -0.64
VPS28-214ENST00000531032 IGLV3-16A0A075B6K0 115 aa11.03□□□□□ -0.64
VPS28-214ENST00000531032 SLC9B1P1A6NJY1 282 aa11.03□□□□□ -0.64
VPS28-214ENST00000531032 CFAP99D6REC4 459 aa11.03□□□□□ -0.64
VPS28-214ENST00000531032 MEN1O00255 615 aa11.03□□□□□ -0.64
VPS28-214ENST00000531032 CEACAM4O75871 244 aa11.03□□□□□ -0.64
VPS28-214ENST00000531032 POLBP06746 335 aa11.03□□□□□ -0.64
VPS28-214ENST00000531032 RBP3P10745 1247 aa11.03□□□□□ -0.64
VPS28-214ENST00000531032 ATP1B2P14415 290 aaPredicted RBP11.03□□□□□ -0.64
VPS28-214ENST00000531032 ITGALP20701 1170 aa11.03□□□□□ -0.64
VPS28-214ENST00000531032 CDH3P22223 829 aa11.03□□□□□ -0.64
VPS28-214ENST00000531032 CYLC1P35663 651 aaPredicted RBP11.03□□□□□ -0.64
VPS28-214ENST00000531032 HADHAP40939 763 aa11.03□□□□□ -0.64
VPS28-214ENST00000531032 PGDP52209 483 aa11.03□□□□□ -0.64
VPS28-214ENST00000531032 KRT33BQ14525 404 aa11.03□□□□□ -0.64
VPS28-214ENST00000531032 PRPSAP1Q14558 356 aa11.03□□□□□ -0.64
VPS28-214ENST00000531032 SPA17Q15506 151 aa11.03□□□□□ -0.64
VPS28-214ENST00000531032 ZNF789Q5FWF6 425 aa11.03□□□□□ -0.64
VPS28-214ENST00000531032 CCDC181Q5TID7 509 aa11.03□□□□□ -0.64
VPS28-214ENST00000531032 PRAMEF17Q5VTA0 474 aa11.03□□□□□ -0.64
VPS28-214ENST00000531032 LCN10Q6JVE6 187 aa11.03□□□□□ -0.64
VPS28-214ENST00000531032 SNX20Q7Z614 316 aa11.03□□□□□ -0.64
VPS28-214ENST00000531032 KLHDC8BQ8IXV7 354 aa11.03□□□□□ -0.64
VPS28-214ENST00000531032 CCDC170Q8IYT3 715 aa11.03□□□□□ -0.64
VPS28-214ENST00000531032 LCN9Q8WX39 176 aa11.03□□□□□ -0.64
VPS28-214ENST00000531032 SPATA13Q96N96 652 aa11.03□□□□□ -0.64
VPS28-214ENST00000531032 PPP1R2P1Q96PQ5 205 aa11.03□□□□□ -0.64
VPS28-214ENST00000531032 COPS8Q99627 209 aa11.03□□□□□ -0.64
VPS28-214ENST00000531032 SLC25A23Q9BV35 468 aa11.03□□□□□ -0.64
VPS28-214ENST00000531032 NLNQ9BYT8 704 aa11.03□□□□□ -0.64
VPS28-214ENST00000531032 OR52A5Q9H2C5 316 aa11.03□□□□□ -0.64
VPS28-214ENST00000531032 SRMSQ9H3Y6 488 aa11.03□□□□□ -0.64
VPS28-214ENST00000531032 COG4Q9H9E3 785 aa11.03□□□□□ -0.64
VPS28-214ENST00000531032 FANCEQ9HB96 536 aa11.03□□□□□ -0.64
VPS28-214ENST00000531032 SYTL2Q9HCH5 934 aa11.03□□□□□ -0.64
VPS28-214ENST00000531032 ACSS2Q9NR19 701 aa11.03□□□□□ -0.64
VPS28-214ENST00000531032 FEZ2Q9UHY8 353 aaPredicted RBP11.03□□□□□ -0.64
VPS28-214ENST00000531032 PCDHA3Q9Y5H8 950 aa11.03□□□□□ -0.64
VPS28-214ENST00000531032 SPTBP11277 2137 aa11.02□□□□□ -0.64
VPS28-214ENST00000531032 TRBV5-4A0A0C4DH59 114 aa11.02□□□□□ -0.65
VPS28-214ENST00000531032 MACROD2A1Z1Q3 448 aa11.02□□□□□ -0.65
VPS28-214ENST00000531032 CCDC66A2RUB6 948 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms