RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 COQ6Q9Y2Z9 468 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 VWA7Q9Y334 891 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 ACTL7BQ9Y614 415 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 PIKFYVEQ9Y2I7 2098 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 DCHS1Q96JQ0 3298 aa7.3□□□□□ -1.24
CD44-228ENST00000528455 THADAQ6YHU6 1953 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 SDK1Q7Z5N4 2213 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 C17orf113A0A1B0GUU1 675 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 A0A1W2PPC4 97 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 HMX2A2RU54 273 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 KLHL33A6NCF5 533 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 FADS2P1A8MWK0 482 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 KPNA5O15131 536 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 RGS16O15492 202 aaPredicted RBP7.29□□□□□ -1.24
CD44-228ENST00000528455 KCNJ13O60928 360 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 PIAS1O75925 651 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 SOD1P00441 154 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 ITGA2BP08514 1039 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 GSTM1P09488 218 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 OR56A5P0C7T3 313 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 ATP1B2P14415 290 aaPredicted RBP7.29□□□□□ -1.24
CD44-228ENST00000528455 PKMP14618 531 aaKnown RBP7.29□□□□□ -1.24
CD44-228ENST00000528455 KELP23276 732 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 CD27P26842 260 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 ATP5DP30049 168 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 MAT2AP31153 395 aaKnown RBP7.29□□□□□ -1.24
CD44-228ENST00000528455 AKT2P31751 481 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 SLC26A3P40879 764 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 CD151P48509 253 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 LIMK2P53671 638 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 PFN3P60673 137 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 OVGP1Q12889 678 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 GPS2Q13227 327 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 SEMA3AQ14563 771 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 PUM1Q14671 1186 aaKnown RBP eCLIP7.29□□□□□ -1.24
CD44-228ENST00000528455 RSPO4Q2I0M5 234 aaPredicted RBP7.29□□□□□ -1.24
CD44-228ENST00000528455 KRT71Q3SY84 523 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 CEP85LQ5SZL2 805 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 GPRC6AQ5T6X5 926 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 RAET1GQ6H3X3 334 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 UGT3A1Q6NUS8 523 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 MACC1Q6ZN28 852 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 BNC2Q6ZN30 1099 aaPredicted RBP7.29□□□□□ -1.24
CD44-228ENST00000528455 LDB1Q86U70 411 aaPredicted RBP7.29□□□□□ -1.24
CD44-228ENST00000528455 IQCHQ86VS3 1027 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 ABCA7Q8IZY2 2146 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 FRMD1Q8N878 549 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 MFSD2AQ8NA29 543 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 PLA2G15Q8NCC3 412 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 ACMSDQ8TDX5 336 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 LPGAT1Q92604 370 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 KLK6Q92876 244 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 DCUN1D1Q96GG9 259 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 LOXL4Q96JB6 756 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 VPS39Q96JC1 886 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 GPR22Q99680 433 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 SH3GL2Q99962 352 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 CLPBQ9H078 707 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 C6orf106Q9H6K1 298 aaPredicted RBP7.29□□□□□ -1.24
CD44-228ENST00000528455 EBF2Q9HAK2 575 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 TMBIM4Q9HC24 238 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 CD93Q9NPY3 652 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 PHPT1Q9NRX4 125 aaPredicted RBP7.29□□□□□ -1.24
CD44-228ENST00000528455 IGSF5Q9NSI5 407 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 SEMA4GQ9NTN9 838 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 TAS2R13Q9NYV9 303 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 SENP1Q9P0U3 644 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 CAMSAP3Q9P1Y5 1249 aaPredicted RBP7.29□□□□□ -1.24
CD44-228ENST00000528455 MBD1Q9UIS9 605 aaPredicted RBP7.29□□□□□ -1.24
CD44-228ENST00000528455 CRYL1Q9Y2S2 319 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 MTO1Q9Y2Z2 717 aaKnown RBP7.29□□□□□ -1.24
CD44-228ENST00000528455 PSAT1Q9Y617 370 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 CEP250Q9BV73 2442 aa7.29□□□□□ -1.24
CD44-228ENST00000528455 RALGAPA1Q6GYQ0 2036 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 SPAG17Q6Q759 2223 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 FAM221AA4D161 298 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 POM121BA6NF01 834 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 K7ESM1 405 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 TNFRSF10CO14798 259 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 CHUKO15111 745 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 RAD51BO15315 384 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 MAGEC1O60732 1142 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 RHOBTB1O94844 696 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 CDK14O94921 469 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 FSBPO95073 299 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 SYF2O95926 243 aaKnown RBP7.28□□□□□ -1.24
CD44-228ENST00000528455 MPOP05164 745 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 PRSS56P0CW18 603 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 COL6A2P12110 1019 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 MYCLP1P12525 358 aaPredicted RBP7.28□□□□□ -1.24
CD44-228ENST00000528455 MSH3P20585 1137 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 TGM1P22735 817 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 CRABP2P29373 138 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 TYK2P29597 1187 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 FMO4P31512 558 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 CA5AP35218 305 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 SLCO1A2P46721 670 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 RABIFP47224 123 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 PPP2CBP62714 309 aa7.28□□□□□ -1.24
CD44-228ENST00000528455 RACK1P63244 317 aaKnown RBP7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms