RNA–Protein interactions for RNA: ENST00000516665.1

RNU6-539P-201, Transcript of RNA, U6 small nuclear 539, pseudogene, humanhuman

BASIC

Gene RNU6-539P, Length 103 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-539P-201ENST00000516665 TEX13DA0A0J9YY54 714 aaPredicted RBP-1.19□□□□□ -2.6
RNU6-539P-201ENST00000516665 TYW5A2RUC4 315 aaKnown RBP-1.19□□□□□ -2.6
RNU6-539P-201ENST00000516665 RPL37AP8A6NKH3 93 aa-1.19□□□□□ -2.6
RNU6-539P-201ENST00000516665 J3QRE1 110 aa-1.19□□□□□ -2.6
RNU6-539P-201ENST00000516665 RPP40O75818 363 aaKnown RBP-1.19□□□□□ -2.6
RNU6-539P-201ENST00000516665 QDPRP09417 244 aa-1.19□□□□□ -2.6
RNU6-539P-201ENST00000516665 SRGAP2BP0DMP2 458 aa-1.19□□□□□ -2.6
RNU6-539P-201ENST00000516665 PCP11498 1178 aaKnown RBP-1.19□□□□□ -2.6
RNU6-539P-201ENST00000516665 NCLP19338 710 aaKnown RBP-1.19□□□□□ -2.6
RNU6-539P-201ENST00000516665 CD22P20273 847 aa-1.19□□□□□ -2.6
RNU6-539P-201ENST00000516665 MTNR1AP48039 350 aa-1.19□□□□□ -2.6
RNU6-539P-201ENST00000516665 GSK3BP49841 420 aa-1.19□□□□□ -2.6
RNU6-539P-201ENST00000516665 CDKN1CP49918 316 aaPredicted RBP-1.19□□□□□ -2.6
RNU6-539P-201ENST00000516665 CSNK2BP67870 215 aa-1.19□□□□□ -2.6
RNU6-539P-201ENST00000516665 GUCY2DQ02846 1103 aa-1.19□□□□□ -2.6
RNU6-539P-201ENST00000516665 PRKG1Q13976 671 aa-1.19□□□□□ -2.6
RNU6-539P-201ENST00000516665 KRT33BQ14525 404 aa-1.19□□□□□ -2.6
RNU6-539P-201ENST00000516665 KIAA0040Q15053 153 aa-1.19□□□□□ -2.6
RNU6-539P-201ENST00000516665 ZNF146Q15072 292 aa-1.19□□□□□ -2.6
RNU6-539P-201ENST00000516665 SLC5A9Q2M3M2 681 aa-1.19□□□□□ -2.6
RNU6-539P-201ENST00000516665 FBXO43Q4G163 708 aa-1.19□□□□□ -2.6
RNU6-539P-201ENST00000516665 SLC45A4Q5BKX6 768 aa-1.19□□□□□ -2.6
RNU6-539P-201ENST00000516665 ZNF770Q6IQ21 691 aaPredicted RBP-1.19□□□□□ -2.6
RNU6-539P-201ENST00000516665 Q75L30 129 aa-1.19□□□□□ -2.6
RNU6-539P-201ENST00000516665 CHMP1BQ7LBR1 199 aa-1.19□□□□□ -2.6
RNU6-539P-201ENST00000516665 ATG9AQ7Z3C6 839 aa-1.19□□□□□ -2.6
RNU6-539P-201ENST00000516665 GRAMD1CQ8IYS0 662 aa-1.19□□□□□ -2.6
RNU6-539P-201ENST00000516665 BEST3Q8N1M1 668 aa-1.19□□□□□ -2.6
RNU6-539P-201ENST00000516665 RDM1Q8NG50 284 aa-1.19□□□□□ -2.6
RNU6-539P-201ENST00000516665 KIAA1524Q8TCG1 905 aa-1.19□□□□□ -2.6
RNU6-539P-201ENST00000516665 MAPK15Q8TD08 544 aa-1.19□□□□□ -2.6
RNU6-539P-201ENST00000516665 TMEM170AQ8WVE7 144 aa-1.19□□□□□ -2.6
RNU6-539P-201ENST00000516665 ORAI1Q96D31 301 aa-1.19□□□□□ -2.6
RNU6-539P-201ENST00000516665 SNX22Q96L94 193 aa-1.19□□□□□ -2.6
RNU6-539P-201ENST00000516665 SIGLEC12Q96PQ1 595 aa-1.19□□□□□ -2.6
RNU6-539P-201ENST00000516665 NUP88Q99567 741 aaPredicted RBP-1.19□□□□□ -2.6
RNU6-539P-201ENST00000516665 PAXXQ9BUH6 204 aa-1.19□□□□□ -2.6
RNU6-539P-201ENST00000516665 C22orf23Q9BZE7 217 aa-1.19□□□□□ -2.6
RNU6-539P-201ENST00000516665 ULBP2Q9BZM5 246 aa-1.19□□□□□ -2.6
RNU6-539P-201ENST00000516665 KLQ9UEF7 1012 aa-1.19□□□□□ -2.6
RNU6-539P-201ENST00000516665 RSPH14Q9UHP6 348 aa-1.19□□□□□ -2.6
RNU6-539P-201ENST00000516665 CLCA3PQ9Y6N3 262 aa-1.19□□□□□ -2.6
RNU6-539P-201ENST00000516665 IGSF10Q6WRI0 2623 aa-1.2□□□□□ -2.6
RNU6-539P-201ENST00000516665 C17orf113A0A1B0GUU1 675 aa-1.2□□□□□ -2.6
RNU6-539P-201ENST00000516665 SHTN1A0MZ66 631 aa-1.2□□□□□ -2.6
RNU6-539P-201ENST00000516665 CBY3A6NI87 242 aa-1.2□□□□□ -2.6
RNU6-539P-201ENST00000516665 SLC38A8A6NNN8 435 aa-1.2□□□□□ -2.6
RNU6-539P-201ENST00000516665 A8MX80 341 aa-1.2□□□□□ -2.6
RNU6-539P-201ENST00000516665 C16orf90A8MZG2 172 aa-1.2□□□□□ -2.6
RNU6-539P-201ENST00000516665 KIF28PB7ZC32 967 aa-1.2□□□□□ -2.6
RNU6-539P-201ENST00000516665 OVOL1O14753 267 aa-1.2□□□□□ -2.6
RNU6-539P-201ENST00000516665 HEXIM1O94992 359 aaKnown RBP-1.2□□□□□ -2.6
RNU6-539P-201ENST00000516665 CYP4B1P13584 511 aa-1.2□□□□□ -2.6
RNU6-539P-201ENST00000516665 MAGP20916 626 aa-1.2□□□□□ -2.6
RNU6-539P-201ENST00000516665 TNFAIP3P21580 790 aa-1.2□□□□□ -2.6
RNU6-539P-201ENST00000516665 LHCGRP22888 699 aa-1.2□□□□□ -2.6
RNU6-539P-201ENST00000516665 LMO2P25791 158 aa-1.2□□□□□ -2.6
RNU6-539P-201ENST00000516665 MDH2P40926 338 aaKnown RBP-1.2□□□□□ -2.6
RNU6-539P-201ENST00000516665 MATKP42679 507 aa-1.2□□□□□ -2.6
RNU6-539P-201ENST00000516665 MMP15P51511 669 aa-1.2□□□□□ -2.6
RNU6-539P-201ENST00000516665 MPPED2Q15777 294 aa-1.2□□□□□ -2.6
RNU6-539P-201ENST00000516665 CNGA2Q16280 664 aa-1.2□□□□□ -2.6
RNU6-539P-201ENST00000516665 CT47A1Q5JQC4 288 aaPredicted RBP-1.2□□□□□ -2.6
RNU6-539P-201ENST00000516665 C18orf63Q68DL7 685 aa-1.2□□□□□ -2.6
RNU6-539P-201ENST00000516665 SLC25A47Q6Q0C1 308 aa-1.2□□□□□ -2.6
RNU6-539P-201ENST00000516665 SLC46A3Q7Z3Q1 461 aa-1.2□□□□□ -2.6
RNU6-539P-201ENST00000516665 ADGRG6Q86SQ4 1221 aa-1.2□□□□□ -2.6
RNU6-539P-201ENST00000516665 GPR180Q86V85 440 aa-1.2□□□□□ -2.6
RNU6-539P-201ENST00000516665 SESTD1Q86VW0 696 aa-1.2□□□□□ -2.6
RNU6-539P-201ENST00000516665 TGIF2LYQ8IUE0 185 aa-1.2□□□□□ -2.6
RNU6-539P-201ENST00000516665 GBGT1Q8N5D6 347 aa-1.2□□□□□ -2.6
RNU6-539P-201ENST00000516665 NIPA2Q8N8Q9 360 aa-1.2□□□□□ -2.6
RNU6-539P-201ENST00000516665 SETD9Q8NE22 299 aa-1.2□□□□□ -2.6
RNU6-539P-201ENST00000516665 TWNKQ96RR1 684 aa-1.2□□□□□ -2.6
RNU6-539P-201ENST00000516665 SERINC2Q96SA4 455 aa-1.2□□□□□ -2.6
RNU6-539P-201ENST00000516665 SMR3AQ99954 134 aa-1.2□□□□□ -2.6
RNU6-539P-201ENST00000516665 PCDHAC1Q9H158 963 aa-1.2□□□□□ -2.6
RNU6-539P-201ENST00000516665 SEBOXQ9HB31 216 aaPredicted RBP-1.2□□□□□ -2.6
RNU6-539P-201ENST00000516665 PDE11AQ9HCR9 933 aa-1.2□□□□□ -2.6
RNU6-539P-201ENST00000516665 SAMSN1Q9NSI8 373 aaKnown RBP-1.2□□□□□ -2.6
RNU6-539P-201ENST00000516665 MAN2C1Q9NTJ4 1040 aa-1.2□□□□□ -2.6
RNU6-539P-201ENST00000516665 FANCLQ9NW38 375 aa-1.2□□□□□ -2.6
RNU6-539P-201ENST00000516665 PPP2R2CQ9Y2T4 447 aa-1.2□□□□□ -2.6
RNU6-539P-201ENST00000516665 PRG3Q9Y2Y8 225 aaPredicted RBP-1.2□□□□□ -2.6
RNU6-539P-201ENST00000516665 ZNF337Q9Y3M9 751 aa-1.2□□□□□ -2.6
RNU6-539P-201ENST00000516665 MTF2Q9Y483 593 aaPredicted RBP-1.2□□□□□ -2.6
RNU6-539P-201ENST00000516665 PCDHA10Q9Y5I2 948 aa-1.2□□□□□ -2.6
RNU6-539P-201ENST00000516665 MED13Q9UHV7 2174 aa-1.2□□□□□ -2.6
RNU6-539P-201ENST00000516665 IGHV3-38A0A0C4DH36 116 aa-1.21□□□□□ -2.6
RNU6-539P-201ENST00000516665 RBMY1BA6NDE4 496 aaKnown RBP-1.21□□□□□ -2.6
RNU6-539P-201ENST00000516665 RBMY1EA6NEQ0 496 aaKnown RBP-1.21□□□□□ -2.6
RNU6-539P-201ENST00000516665 ISM1B1AKI9 464 aa-1.21□□□□□ -2.6
RNU6-539P-201ENST00000516665 ANKRD66B4E2M5 251 aa-1.21□□□□□ -2.6
RNU6-539P-201ENST00000516665 EMC8O43402 210 aa-1.21□□□□□ -2.6
RNU6-539P-201ENST00000516665 N4BP1O75113 896 aaKnown RBP-1.21□□□□□ -2.6
RNU6-539P-201ENST00000516665 MTA2O94776 668 aa-1.21□□□□□ -2.6
RNU6-539P-201ENST00000516665 SERPINC1P01008 464 aa-1.21□□□□□ -2.6
RNU6-539P-201ENST00000516665 RBMY1DP0C7P1 496 aaKnown RBP-1.21□□□□□ -2.6
RNU6-539P-201ENST00000516665 GTF2F1P35269 517 aaKnown RBP eCLIP-1.21□□□□□ -2.6
RNU6-539P-201ENST00000516665 TSFMP43897 325 aaKnown RBP-1.21□□□□□ -2.6
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms