RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 PTCH1Q13635 1447 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 AKNAQ7Z591 1439 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 CUX2O14529 1486 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 A0A087WZY1 265 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 IGKV6D-41A0A0C4DH26 115 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 A0A0U1RQS6 177 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 LOC100653049A0A140TA62 436 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 GOLGA6L7A0A1B0GV03 622 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 C2orf92A0A1B0GVN3 265 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 LINC00854A0A1B0GVQ3 168 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 FAM240BA0A1B0GVZ2 78 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 RPS10-NUDT3A0A1W2PQS6 291 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 LNP1A1A4G5 178 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 A1L4Q6 167 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 SMIM30A4D0T7 59 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 TRIM49BA6NDI0 452 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 OR6C68A6NDL8 312 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 C5orf51A6NDU8 294 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 CFAP73A6NFT4 308 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZSCAN5CA6NGD5 496 aaPredicted RBP0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 FAM47DPA6NHR8 397 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 NCF1BA6NI72 391 aaPredicted RBP0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 SLC15A5A6NIM6 579 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 NPIPB13A6NJU9 1138 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 PCP4L1A6NKN8 68 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 OR6C75A6NL08 312 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 MARCH11A6NNE9 402 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 LINC00473A8K010 186 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 NPIPB5A8MRT5 1133 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 NCF1CA8MVU1 366 aaPredicted RBP0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 BECN2A8MW95 431 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 GRXCR1A8MXD5 290 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZNF879B4DU55 563 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 NPIPB4C9JG80 1138 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 KBTBD13C9JR72 458 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 ADM5C9JUS6 153 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 E9PLN8 166 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 F8WDY8 70 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 H0YIN7 160 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 M0QYT0 321 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 M0QZQ0 153 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 AGPSO00116 658 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 KIF2AO00139 706 aaPredicted RBP0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 PLK4O00444 970 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 WNT10BO00744 389 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 CES2O00748 559 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 CLDN4O14493 209 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 SOCS6O14544 535 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 CXCL11O14625 94 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 PRRG1O14668 218 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 ATP2A1O14983 1001 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 ANKRD28O15084 1053 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 LDLRAD4O15165 306 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 CETN3O15182 167 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 MAPK13O15264 365 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 INPPL1O15357 1258 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 POLR2DO15514 142 aaKnown RBP0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 TTI1O43156 1089 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 NDUFS4O43181 175 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 SMAD6O43541 496 aaKnown RBP0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 SPRY1O43609 319 aaPredicted RBP0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 TLX2O43763 284 aaPredicted RBP0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 GPRIN2O60269 458 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 TSPAN1O60635 241 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 TBX19O60806 448 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 PRAMEF11O60813 436 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 FCGR3BO75015 233 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 HSF2BPO75031 334 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 ATP9AO75110 1047 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 ATG13O75143 517 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 VPS4BO75351 444 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 MTX2O75431 263 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 PMPCBO75439 489 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 MED24O75448 989 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 ERLIN1O75477 346 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 WBP4O75554 376 aaKnown RBP0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 SCGB2A1O75556 95 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 JRKO75564 520 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 SURF6O75683 361 aaKnown RBP0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 RHBDL1O75783 438 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 CIB2O75838 187 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 KRT34O76011 436 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 KRT36O76013 467 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 RSL1D1O76021 490 aaKnown RBP0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 STC2O76061 302 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 PDE9AO76083 593 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 TOMM70O94826 608 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 SLCO2B1O94956 709 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 TJP3O95049 919 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 PRSS23O95084 383 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 AKR7A3O95154 331 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 LUC7L3O95232 432 aaKnown RBP0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 KAT7O95251 611 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 CELF2O95319 508 aaKnown RBP0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 PGLSO95336 258 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 PRAMEF12O95522 483 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 STAMBPO95630 424 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 PTBP3O95758 552 aaKnown RBP0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 SLC16A8O95907 504 aa0.57□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms