RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 IFI30P13284 250 aa12.96□□□□□ -0.33
TCOF1-213ENST00000514442 GRIA2P42262 883 aa12.96□□□□□ -0.33
TCOF1-213ENST00000514442 TXNL4AP83876 142 aaKnown RBP12.96□□□□□ -0.33
TCOF1-213ENST00000514442 PCLAFQ15004 111 aa12.96□□□□□ -0.33
TCOF1-213ENST00000514442 TIFABQ6ZNK6 161 aa12.96□□□□□ -0.33
TCOF1-213ENST00000514442 RAVER1Q8IY67 606 aaKnown RBP12.96□□□□□ -0.33
TCOF1-213ENST00000514442 CLYBLQ8N0X4 340 aa12.96□□□□□ -0.33
TCOF1-213ENST00000514442 TMEM130Q8N3G9 435 aa12.96□□□□□ -0.33
TCOF1-213ENST00000514442 SUSD3Q96L08 255 aa12.96□□□□□ -0.33
TCOF1-213ENST00000514442 ZNF717Q9BY31 904 aaPredicted RBP12.96□□□□□ -0.33
TCOF1-213ENST00000514442 MIR1-1HGQ9H1L0 117 aa12.96□□□□□ -0.33
TCOF1-213ENST00000514442 MAGEH1Q9H213 219 aa12.96□□□□□ -0.33
TCOF1-213ENST00000514442 ALG2Q9H553 416 aa12.96□□□□□ -0.33
TCOF1-213ENST00000514442 ZBTB26Q9HCK0 441 aa12.96□□□□□ -0.33
TCOF1-213ENST00000514442 RPS6KB2Q9UBS0 482 aa12.96□□□□□ -0.33
TCOF1-213ENST00000514442 TMEM98Q9Y2Y6 226 aa12.96□□□□□ -0.33
TCOF1-213ENST00000514442 POLR3HQ9Y535 204 aaPredicted RBP12.96□□□□□ -0.33
TCOF1-213ENST00000514442 EFCAB9A8MZ26 197 aa12.96□□□□□ -0.34
TCOF1-213ENST00000514442 PRAMEF1O95521 474 aa12.96□□□□□ -0.34
TCOF1-213ENST00000514442 GJA1P17302 382 aa12.96□□□□□ -0.34
TCOF1-213ENST00000514442 COX10Q12887 443 aa12.96□□□□□ -0.34
TCOF1-213ENST00000514442 GLYATQ6IB77 296 aa12.96□□□□□ -0.34
TCOF1-213ENST00000514442 CDHR3Q6ZTQ4 885 aa12.96□□□□□ -0.34
TCOF1-213ENST00000514442 USP43Q70EL4 1123 aa12.96□□□□□ -0.34
TCOF1-213ENST00000514442 LRRC17Q8N6Y2 441 aa12.96□□□□□ -0.34
TCOF1-213ENST00000514442 KREMEN2Q8NCW0 462 aa12.96□□□□□ -0.34
TCOF1-213ENST00000514442 CLHC1Q8NHS4 586 aa12.96□□□□□ -0.34
TCOF1-213ENST00000514442 SLC35F5Q8WV83 523 aa12.96□□□□□ -0.34
TCOF1-213ENST00000514442 BORCS6Q96GS4 357 aa12.96□□□□□ -0.34
TCOF1-213ENST00000514442 SLC9A7Q96T83 725 aa12.96□□□□□ -0.34
TCOF1-213ENST00000514442 WRAP53Q9BUR4 548 aaKnown RBP12.96□□□□□ -0.34
TCOF1-213ENST00000514442 MKS1Q9NXB0 559 aa12.96□□□□□ -0.34
TCOF1-213ENST00000514442 TK2O00142 265 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 SNNO75324 88 aaPredicted RBP12.95□□□□□ -0.34
TCOF1-213ENST00000514442 RFPL1O75677 317 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 PSMD8P48556 350 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 SLC9A3P48764 834 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 MAPKAPK2P49137 400 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 AKR1D1P51857 326 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 LIPEQ05469 1076 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 IL18R1Q13478 541 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 RFTN1Q14699 578 aaPredicted RBP12.95□□□□□ -0.34
TCOF1-213ENST00000514442 MAPKAPK3Q16644 382 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 KIAA0408Q6ZU52 694 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 NPLQ9BXD5 320 aaPredicted RBP12.95□□□□□ -0.34
TCOF1-213ENST00000514442 ANKRD60Q9BZ19 345 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 SPRTNQ9H040 489 aaPredicted RBP12.95□□□□□ -0.34
TCOF1-213ENST00000514442 FKBPLQ9UIM3 349 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 TIMM22Q9Y584 194 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 A0A1W2PRU2 124 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 BHMG1C9JSJ3 638 aaPredicted RBP12.95□□□□□ -0.34
TCOF1-213ENST00000514442 TULP3O75386 442 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 COL6A2P12110 1019 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 HTR7P34969 479 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 PPIGQ13427 754 aaKnown RBP eCLIP12.95□□□□□ -0.346e-8■■□□□ 14.3
TCOF1-213ENST00000514442 KCNJ11Q14654 390 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 VPS26BQ4G0F5 336 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 TSTD2Q5T7W7 516 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 PAOXQ6QHF9 649 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 LILRB4Q8NHJ6 448 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 FUBP3Q96I24 572 aaKnown RBP eCLIP12.95□□□□□ -0.34
TCOF1-213ENST00000514442 CGREF1Q99674 301 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 ARHGAP39Q9C0H5 1083 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 MAPRE3Q9UPY8 281 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 IFT52Q9Y366 437 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 STYXL1Q9Y6J8 313 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 A0A1W2PRG6 482 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 OR2AG2A6NM03 316 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 AQP9O43315 295 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 CXCR3P49682 368 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 ITGA1P56199 1179 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 CCSAPQ6IQ19 270 aaPredicted RBP12.95□□□□□ -0.34
TCOF1-213ENST00000514442 TXNDC11Q6PKC3 985 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 CMASQ8NFW8 434 aaPredicted RBP12.95□□□□□ -0.34
TCOF1-213ENST00000514442 STYXQ8WUJ0 223 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 CXorf40BQ96DE9 158 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 PPP3R2Q96LZ3 170 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 ADPRHL2Q9NX46 363 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 TBC1D3DA0A087WVF3 549 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 TBC1D3IA0A087WXS9 549 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 TBC1D3EA0A087X179 549 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 TBC1D3KA0A087X1G2 549 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 TBC1D3FA6NER0 549 aaPredicted RBP12.95□□□□□ -0.34
TCOF1-213ENST00000514442 TBC1D3LB9A6J9 549 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 RFPL2O75678 378 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 IPO13O94829 963 aaKnown RBP12.95□□□□□ -0.34
TCOF1-213ENST00000514442 EPHX1P07099 455 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 TBC1D3HP0C7X1 549 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 CYP4B1P13584 511 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 KCNE1P15382 129 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 PCSK6P29122 969 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 SLC25A11Q02978 314 aaKnown RBP12.95□□□□□ -0.34
TCOF1-213ENST00000514442 GK3PQ14409 553 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 FAM46CQ5VWP2 391 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 TBC1D3GQ6DHY5 549 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 CLEC6AQ6EIG7 209 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 TBC1D3CQ6IPX1 549 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 TBC1D3Q8IZP1 549 aaPredicted RBP12.95□□□□□ -0.34
TCOF1-213ENST00000514442 LMO3Q8TAP4 145 aa12.95□□□□□ -0.34
TCOF1-213ENST00000514442 DDX1Q92499 740 aaKnown RBP12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms