RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 ISCA2Q86U28 154 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 LILRA2Q8N149 483 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 SMG8Q8ND04 991 aaKnown RBP8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 OR4F6Q8NGB9 312 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 SHKBP1Q8TBC3 707 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 ENKURQ8TC29 256 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 DLEC1Q9Y238 1755 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 H0YAE9 185 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 SLC22A1O15245 554 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 MAGEB3O15480 346 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 IDH3BO43837 385 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 C7P10643 843 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 PRPS2P11908 318 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 PPIBP23284 216 aaKnown RBP8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 MYF6P23409 242 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 RPS24P62847 133 aaKnown RBP8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 POLR2LP62875 67 aaKnown RBP8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 TUBB3Q13509 450 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 DGKKQ5KSL6 1271 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 FOXB2Q5VYV0 432 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 RANBP10Q6VN20 620 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 ITIH5Q86UX2 942 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 TBC1D19Q8N5T2 526 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 KHSRPQ92945 711 aaKnown RBP eCLIP8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 AURKBQ96GD4 344 aaPredicted RBP8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 FUBP3Q96I24 572 aaKnown RBP eCLIP8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 ZNF599Q96NL3 588 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 ARMC1Q9NVT9 282 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 ERGIC3Q9Y282 383 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 A0A1B0GVM2 712 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 TRIM43BA6NCK2 446 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 STX16O14662 325 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 TSPAN19P0C672 248 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 CHRM1P11229 460 aaPredicted RBP8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 HSD17B1P14061 328 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 WEE1P30291 646 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 CTSKP43235 329 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 LRP8Q14114 963 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 TGFBIQ15582 683 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 PM20D1Q6GTS8 502 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 LCN8Q6JVE9 175 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 CLEC14AQ86T13 490 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 MAGEB10Q96LZ2 347 aaPredicted RBP8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 DNAJC11Q9NVH1 559 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 TMEM248Q9NWD8 314 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 TMEM181Q9P2C4 612 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 MTRRQ9UBK8 725 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 TNFRSF11BO00300 401 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 KPNA5O15131 536 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 NPPAP01160 153 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 MYL12AP19105 171 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 CAPN3P20807 821 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 OR1D2P34982 312 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 HLCSP50747 726 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 TMBIM6P55061 237 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 EMX2Q04743 252 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 GALNT1Q10472 559 aaPredicted RBP8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 PMS2P3Q13401 168 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 TP53BP2Q13625 1128 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 GRM2Q14416 872 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 ANXA8L1Q5VT79 327 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 SLC24A5Q71RS6 500 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 GOLM1Q8NBJ4 401 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 RHEBL1Q8TAI7 183 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 NPLOC4Q8TAT6 608 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 GRIN3AQ8TCU5 1115 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 FAR1Q8WVX9 515 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 SUSD3Q96L08 255 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 MYRFLQ96LU7 910 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 ATG10Q9H0Y0 220 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 POPDC3Q9HBV1 291 aa8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 INTS7Q9NVH2 962 aaKnown RBP8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 FCF1Q9Y324 198 aaKnown RBP8.28□□□□□ -1.08
LIMCH1-216ENST00000512820 SAGE2PA6NJ88 616 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 K7EPI3 171 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 PGLSO95336 258 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 HAPLN1P10915 354 aaPredicted RBP8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 CYP2A6P11509 494 aaPredicted RBP8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 KCNA5P22460 613 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 SLC6A2P23975 617 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 PPP2R1BP30154 601 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 ANXA11P50995 505 aaKnown RBP8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 SLC16A1P53985 500 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 TPTEP56180 551 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 OLR1P78380 273 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 OR4A15Q8NGL6 344 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 OR10Q1Q8NGQ4 319 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 OR52J3Q8NH60 311 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 EBPLQ9BY08 206 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 BRD9Q9H8M2 597 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 AIG1Q9NVV5 245 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 SATB2Q9UPW6 733 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 C7orf72A4D263 438 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 IQCF5A8MTL0 148 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 LOC110117498-PIK3R3F6TDL0 507 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 BOLA2-SMG1P6H3BVE0 249 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 DUSP11O75319 330 aaKnown RBP8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 ERN1O75460 977 aaKnown RBP8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 PABPC1P11940 636 aaKnown RBP8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 HTR1EP28566 365 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms