RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 PLEKHS1Q5SXH7 462 aa12.06□□□□□ -0.48
CPSF3-204ENST00000489403 PAPD7Q5XG87 772 aaKnown RBP12.06□□□□□ -0.48
CPSF3-204ENST00000489403 BBS12Q6ZW61 710 aa12.06□□□□□ -0.48
CPSF3-204ENST00000489403 CFAP206Q8IYR0 622 aa12.06□□□□□ -0.48
CPSF3-204ENST00000489403 RCOR2Q8IZ40 523 aa12.06□□□□□ -0.48
CPSF3-204ENST00000489403 DSELQ8IZU8 1212 aa12.06□□□□□ -0.48
CPSF3-204ENST00000489403 EFCAB3Q8N7B9 438 aa12.06□□□□□ -0.48
CPSF3-204ENST00000489403 ENDOVQ8N8Q3 282 aaKnown RBP12.06□□□□□ -0.48
CPSF3-204ENST00000489403 OR4E2Q8NGC2 313 aa12.06□□□□□ -0.48
CPSF3-204ENST00000489403 OR13C4Q8NGS5 318 aa12.06□□□□□ -0.48
CPSF3-204ENST00000489403 HM13Q8TCT9 377 aa12.06□□□□□ -0.48
CPSF3-204ENST00000489403 KRT35Q92764 455 aa12.06□□□□□ -0.48
CPSF3-204ENST00000489403 RBM41Q96IZ5 413 aaKnown RBP12.06□□□□□ -0.48
CPSF3-204ENST00000489403 APOL2Q9BQE5 337 aa12.06□□□□□ -0.48
CPSF3-204ENST00000489403 HEMGNQ9BXL5 484 aa12.06□□□□□ -0.48
CPSF3-204ENST00000489403 FANCEQ9HB96 536 aa12.06□□□□□ -0.48
CPSF3-204ENST00000489403 C1GALT1Q9NS00 363 aa12.06□□□□□ -0.48
CPSF3-204ENST00000489403 VPS4AQ9UN37 437 aa12.06□□□□□ -0.48
CPSF3-204ENST00000489403 COLEC10Q9Y6Z7 277 aa12.06□□□□□ -0.48
CPSF3-204ENST00000489403 C5orf60A6NFR6 353 aa12.05□□□□□ -0.48
CPSF3-204ENST00000489403 SLC9B1P1A6NJY1 282 aa12.05□□□□□ -0.48
CPSF3-204ENST00000489403 H7C0C1 242 aa12.05□□□□□ -0.48
CPSF3-204ENST00000489403 APOC4-APOC2K7ER74 178 aa12.05□□□□□ -0.48
CPSF3-204ENST00000489403 MEN1O00255 615 aa12.05□□□□□ -0.48
CPSF3-204ENST00000489403 ANXA9O76027 345 aa12.05□□□□□ -0.48
CPSF3-204ENST00000489403 LCA5LO95447 670 aa12.05□□□□□ -0.48
CPSF3-204ENST00000489403 APOC2P02655 101 aa12.05□□□□□ -0.48
CPSF3-204ENST00000489403 KLK3P07288 261 aaPredicted RBP12.05□□□□□ -0.48
CPSF3-204ENST00000489403 RAB40ALP0C0E4 278 aa12.05□□□□□ -0.48
CPSF3-204ENST00000489403 PYGMP11217 842 aa12.05□□□□□ -0.48
CPSF3-204ENST00000489403 PSMB4P28070 264 aa12.05□□□□□ -0.48
CPSF3-204ENST00000489403 ATP5OP48047 213 aa12.05□□□□□ -0.48
CPSF3-204ENST00000489403 TMPRSS15P98073 1019 aa12.05□□□□□ -0.48
CPSF3-204ENST00000489403 PRKAA1Q13131 559 aa12.05□□□□□ -0.48
CPSF3-204ENST00000489403 MSLNQ13421 630 aaPredicted RBP12.05□□□□□ -0.48
CPSF3-204ENST00000489403 KRT33BQ14525 404 aa12.05□□□□□ -0.48
CPSF3-204ENST00000489403 ZNF789Q5FWF6 425 aa12.05□□□□□ -0.48
CPSF3-204ENST00000489403 FAM69BQ5VUD6 431 aa12.05□□□□□ -0.48
CPSF3-204ENST00000489403 ITPRIPL1Q6GPH6 555 aa12.05□□□□□ -0.48
CPSF3-204ENST00000489403 RANBP10Q6VN20 620 aa12.05□□□□□ -0.48
CPSF3-204ENST00000489403 CNGA4Q8IV77 575 aa12.05□□□□□ -0.48
CPSF3-204ENST00000489403 GALNT11Q8NCW6 608 aa12.05□□□□□ -0.48
CPSF3-204ENST00000489403 ACVR1CQ8NER5 493 aa12.05□□□□□ -0.48
CPSF3-204ENST00000489403 OR1L3Q8NH93 324 aa12.05□□□□□ -0.48
CPSF3-204ENST00000489403 CPT1BQ92523 772 aa12.05□□□□□ -0.48
CPSF3-204ENST00000489403 CLIP3Q96DZ5 547 aa12.05□□□□□ -0.48
CPSF3-204ENST00000489403 NRTNQ99748 197 aa12.05□□□□□ -0.48
CPSF3-204ENST00000489403 CCM2Q9BSQ5 444 aa12.05□□□□□ -0.48
CPSF3-204ENST00000489403 LRRC4CQ9HCJ2 640 aa12.05□□□□□ -0.48
CPSF3-204ENST00000489403 PCMTD2Q9NV79 361 aa12.05□□□□□ -0.48
CPSF3-204ENST00000489403 CRLS1Q9UJA2 301 aa12.05□□□□□ -0.48
CPSF3-204ENST00000489403 TCFL5Q9UL49 500 aa12.05□□□□□ -0.48
CPSF3-204ENST00000489403 SNX7Q9UNH6 387 aa12.05□□□□□ -0.48
CPSF3-204ENST00000489403 TFR2Q9UP52 801 aa12.05□□□□□ -0.48
CPSF3-204ENST00000489403 MAP4K5Q9Y4K4 846 aa12.05□□□□□ -0.48
CPSF3-204ENST00000489403 HEBP2Q9Y5Z4 205 aa12.05□□□□□ -0.48
CPSF3-204ENST00000489403 PCSK5Q92824 1860 aa12.05□□□□□ -0.48
CPSF3-204ENST00000489403 SHANK1Q9Y566 2161 aa12.05□□□□□ -0.48
CPSF3-204ENST00000489403 SPTBP11277 2137 aa12.04□□□□□ -0.48
CPSF3-204ENST00000489403 GSAPA4D1B5 854 aa12.04□□□□□ -0.48
CPSF3-204ENST00000489403 TMEM150CB9EJG8 249 aa12.04□□□□□ -0.48
CPSF3-204ENST00000489403 AKR1B15C9JRZ8 316 aaPredicted RBP12.04□□□□□ -0.48
CPSF3-204ENST00000489403 MATN2O00339 956 aa12.04□□□□□ -0.48
CPSF3-204ENST00000489403 BTN3A1O00481 513 aa12.04□□□□□ -0.48
CPSF3-204ENST00000489403 CEACAM4O75871 244 aa12.04□□□□□ -0.48
CPSF3-204ENST00000489403 TMEM63AO94886 807 aa12.04□□□□□ -0.48
CPSF3-204ENST00000489403 CAPN1P07384 714 aa12.04□□□□□ -0.48
CPSF3-204ENST00000489403 MSL3P1P0C860 447 aa12.04□□□□□ -0.48
CPSF3-204ENST00000489403 RALBP11234 206 aa12.04□□□□□ -0.48
CPSF3-204ENST00000489403 ATP1B2P14415 290 aaPredicted RBP12.04□□□□□ -0.48
CPSF3-204ENST00000489403 ST6GAL1P15907 406 aa12.04□□□□□ -0.48
CPSF3-204ENST00000489403 MAGEA1P43355 309 aa12.04□□□□□ -0.48
CPSF3-204ENST00000489403 LMAN1P49257 510 aa12.04□□□□□ -0.48
CPSF3-204ENST00000489403 ZNF140P52738 457 aaPredicted RBP12.04□□□□□ -0.48
CPSF3-204ENST00000489403 OTUD4Q01804 1114 aaKnown RBP12.04□□□□□ -0.48
CPSF3-204ENST00000489403 ZNF658BQ4V348 819 aaPredicted RBP12.04□□□□□ -0.48
CPSF3-204ENST00000489403 ANKRD20A2Q5SQ80 823 aa12.04□□□□□ -0.48
CPSF3-204ENST00000489403 FHL5Q5TD97 284 aa12.04□□□□□ -0.48
CPSF3-204ENST00000489403 ANKRD20A1Q5TYW2 823 aa12.04□□□□□ -0.48
CPSF3-204ENST00000489403 ANKRD20A3Q5VUR7 823 aa12.04□□□□□ -0.48
CPSF3-204ENST00000489403 HIST2H2BCQ6DN03 193 aa12.04□□□□□ -0.48
CPSF3-204ENST00000489403 C11orf63Q6NUN7 778 aa12.04□□□□□ -0.48
CPSF3-204ENST00000489403 FAM198BQ6UWH4 519 aa12.04□□□□□ -0.48
CPSF3-204ENST00000489403 MICALCLQ6ZW33 695 aa12.04□□□□□ -0.48
CPSF3-204ENST00000489403 LURAP1LQ8IV03 231 aa12.04□□□□□ -0.48
CPSF3-204ENST00000489403 SYTL1Q8IYJ3 562 aa12.04□□□□□ -0.48
CPSF3-204ENST00000489403 NXPE1Q8N323 547 aa12.04□□□□□ -0.48
CPSF3-204ENST00000489403 FDCSPQ8NFU4 85 aa12.04□□□□□ -0.48
CPSF3-204ENST00000489403 LCN9Q8WX39 176 aa12.04□□□□□ -0.48
CPSF3-204ENST00000489403 ULK4Q96C45 1275 aa12.04□□□□□ -0.48
CPSF3-204ENST00000489403 DCUN1D1Q96GG9 259 aa12.04□□□□□ -0.48
CPSF3-204ENST00000489403 COPS8Q99627 209 aa12.04□□□□□ -0.48
CPSF3-204ENST00000489403 NLNQ9BYT8 704 aa12.04□□□□□ -0.48
CPSF3-204ENST00000489403 OR52A5Q9H2C5 316 aa12.04□□□□□ -0.48
CPSF3-204ENST00000489403 FAM96AQ9H5X1 160 aa12.04□□□□□ -0.48
CPSF3-204ENST00000489403 COG4Q9H9E3 785 aa12.04□□□□□ -0.48
CPSF3-204ENST00000489403 ZNF451Q9Y4E5 1061 aa12.04□□□□□ -0.48
CPSF3-204ENST00000489403 C17orf113A0A1B0GUU1 675 aa12.03□□□□□ -0.48
CPSF3-204ENST00000489403 CCDC66A2RUB6 948 aa12.03□□□□□ -0.48
CPSF3-204ENST00000489403 BTN3A3O00478 584 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms