RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-213ENST00000488520 HEATR9A2RTY3 570 aa8.61□□□□□ -1.03
USP4-213ENST00000488520 SDR42E2A6NKP2 422 aa8.61□□□□□ -1.03
USP4-213ENST00000488520 STMND1H3BQB6 276 aa8.61□□□□□ -1.03
USP4-213ENST00000488520 GOLGA8MH3BSY2 632 aa8.61□□□□□ -1.03
USP4-213ENST00000488520 B4GAT1O43505 415 aa8.61□□□□□ -1.03
USP4-213ENST00000488520 SUN1O94901 812 aa8.61□□□□□ -1.03
USP4-213ENST00000488520 SLU7O95391 586 aaKnown RBP8.61□□□□□ -1.03
USP4-213ENST00000488520 SLC4A1P02730 911 aa8.61□□□□□ -1.03
USP4-213ENST00000488520 NTRK1P04629 796 aa8.61□□□□□ -1.03
USP4-213ENST00000488520 PYGLP06737 847 aa8.61□□□□□ -1.03
USP4-213ENST00000488520 FURINP09958 794 aa8.61□□□□□ -1.03
USP4-213ENST00000488520 PIRTP0C851 137 aa8.61□□□□□ -1.03
USP4-213ENST00000488520 FGF3P11487 239 aaPredicted RBP8.61□□□□□ -1.03
USP4-213ENST00000488520 MLNP12872 115 aa8.61□□□□□ -1.03
USP4-213ENST00000488520 GP1BBP13224 206 aa8.61□□□□□ -1.03
USP4-213ENST00000488520 LIFP15018 202 aa8.61□□□□□ -1.03
USP4-213ENST00000488520 LPOP22079 712 aaPredicted RBP8.61□□□□□ -1.03
USP4-213ENST00000488520 ADRA1DP25100 572 aa8.61□□□□□ -1.03
USP4-213ENST00000488520 ALDH4A1P30038 563 aa8.61□□□□□ -1.03
USP4-213ENST00000488520 ADRA1AP35348 466 aa8.61□□□□□ -1.03
USP4-213ENST00000488520 HADHAP40939 763 aa8.61□□□□□ -1.03
USP4-213ENST00000488520 MAZP56270 477 aaKnown RBP8.61□□□□□ -1.03
USP4-213ENST00000488520 POLE2P56282 527 aa8.61□□□□□ -1.03
USP4-213ENST00000488520 SESN2P58004 480 aaPredicted RBP8.61□□□□□ -1.03
USP4-213ENST00000488520 B4GALNT1Q00973 533 aa8.61□□□□□ -1.03
USP4-213ENST00000488520 GUCY2DQ02846 1103 aa8.61□□□□□ -1.03
USP4-213ENST00000488520 KCNAB2Q13303 367 aa8.61□□□□□ -1.03
USP4-213ENST00000488520 HLTFQ14527 1009 aaKnown RBP eCLIP8.61□□□□□ -1.03
USP4-213ENST00000488520 MORF4L2Q15014 288 aa8.61□□□□□ -1.03
USP4-213ENST00000488520 TAF1AQ15573 450 aaPredicted RBP8.61□□□□□ -1.03
USP4-213ENST00000488520 DNAJC21Q5F1R6 531 aaKnown RBP8.61□□□□□ -1.03
USP4-213ENST00000488520 PCID2Q5JVF3 399 aa8.61□□□□□ -1.03
USP4-213ENST00000488520 LRRC66Q68CR7 880 aa8.61□□□□□ -1.03
USP4-213ENST00000488520 KCTD11Q693B1 232 aa8.61□□□□□ -1.03
USP4-213ENST00000488520 LRRC8BQ6P9F7 803 aa8.61□□□□□ -1.03
USP4-213ENST00000488520 OGFOD3Q6PK18 319 aa8.61□□□□□ -1.03
USP4-213ENST00000488520 LIPIQ6XZB0 460 aa8.61□□□□□ -1.03
USP4-213ENST00000488520 CEP128Q6ZU80 1094 aa8.61□□□□□ -1.03
USP4-213ENST00000488520 PIM3Q86V86 326 aa8.61□□□□□ -1.03
USP4-213ENST00000488520 HOOK3Q86VS8 718 aa8.61□□□□□ -1.03
USP4-213ENST00000488520 IFT20Q8IY31 132 aa8.61□□□□□ -1.03
USP4-213ENST00000488520 RAVER1Q8IY67 606 aaKnown RBP8.61□□□□□ -1.03
USP4-213ENST00000488520 PDIK1LQ8N165 341 aa8.61□□□□□ -1.03
USP4-213ENST00000488520 MCUQ8NE86 351 aa8.61□□□□□ -1.03
USP4-213ENST00000488520 PPHLN1Q8NEY8 458 aaKnown RBP8.61□□□□□ -1.03
USP4-213ENST00000488520 OR56A4Q8NGH8 313 aa8.61□□□□□ -1.03
USP4-213ENST00000488520 IFT81Q8WYA0 676 aa8.61□□□□□ -1.03
USP4-213ENST00000488520 NKD1Q969G9 470 aa8.61□□□□□ -1.03
USP4-213ENST00000488520 FUBP1Q96AE4 644 aaKnown RBP8.61□□□□□ -1.03
USP4-213ENST00000488520 TMEM159Q96B96 161 aa8.61□□□□□ -1.03
USP4-213ENST00000488520 NSMCE3Q96MG7 304 aa8.61□□□□□ -1.03
USP4-213ENST00000488520 TRIB3Q96RU7 358 aa8.61□□□□□ -1.03
USP4-213ENST00000488520 TTC1Q99614 292 aa8.61□□□□□ -1.03
USP4-213ENST00000488520 NUDT22Q9BRQ3 303 aa8.61□□□□□ -1.03
USP4-213ENST00000488520 TRIM51Q9BSJ1 452 aa8.61□□□□□ -1.03
USP4-213ENST00000488520 IL22Q9GZX6 179 aa8.61□□□□□ -1.03
USP4-213ENST00000488520 TSPYL1Q9H0U9 437 aa8.61□□□□□ -1.03
USP4-213ENST00000488520 CDH19Q9H159 772 aa8.61□□□□□ -1.03
USP4-213ENST00000488520 ADNPQ9H2P0 1102 aa8.61□□□□□ -1.03
USP4-213ENST00000488520 FAM83DQ9H4H8 585 aa8.61□□□□□ -1.03
USP4-213ENST00000488520 ARNT2Q9HBZ2 717 aa8.61□□□□□ -1.03
USP4-213ENST00000488520 CYP4F12Q9HCS2 524 aa8.61□□□□□ -1.03
USP4-213ENST00000488520 XAB2Q9HCS7 855 aaKnown RBP8.61□□□□□ -1.03
USP4-213ENST00000488520 FGF22Q9HCT0 170 aa8.61□□□□□ -1.03
USP4-213ENST00000488520 ZNF71Q9NQZ8 489 aaPredicted RBP8.61□□□□□ -1.03
USP4-213ENST00000488520 AKAP7Q9P0M2 348 aaPredicted RBP8.61□□□□□ -1.03
USP4-213ENST00000488520 WHRNQ9P202 907 aa8.61□□□□□ -1.03
USP4-213ENST00000488520 MTRF1LQ9UGC7 380 aaKnown RBP8.61□□□□□ -1.03
USP4-213ENST00000488520 PRRC2CQ9Y520 2896 aaKnown RBP8.6□□□□□ -1.03
USP4-213ENST00000488520 SPENQ96T58 3664 aaKnown RBP8.6□□□□□ -1.03
USP4-213ENST00000488520 NPIPB15A6NHN6 443 aaPredicted RBP8.6□□□□□ -1.03
USP4-213ENST00000488520 CACNB4O00305 520 aaPredicted RBP8.6□□□□□ -1.03
USP4-213ENST00000488520 RECQL5O94762 991 aaPredicted RBP8.6□□□□□ -1.03
USP4-213ENST00000488520 CPNE6O95741 557 aa8.6□□□□□ -1.03
USP4-213ENST00000488520 PNLIPP16233 465 aa8.6□□□□□ -1.03
USP4-213ENST00000488520 PAMP19021 973 aa8.6□□□□□ -1.03
USP4-213ENST00000488520 CD82P27701 267 aa8.6□□□□□ -1.03
USP4-213ENST00000488520 PPARGP37231 505 aaPredicted RBP8.6□□□□□ -1.03
USP4-213ENST00000488520 MMP12P39900 470 aa8.6□□□□□ -1.03
USP4-213ENST00000488520 CCR10P46092 362 aa8.6□□□□□ -1.03
USP4-213ENST00000488520 ITGA8P53708 1063 aa8.6□□□□□ -1.03
USP4-213ENST00000488520 DRG2P55039 364 aaKnown RBP8.6□□□□□ -1.03
USP4-213ENST00000488520 PLTPP55058 493 aa8.6□□□□□ -1.03
USP4-213ENST00000488520 ARL4CP56559 192 aa8.6□□□□□ -1.03
USP4-213ENST00000488520 MRPS25P82663 173 aaKnown RBP8.6□□□□□ -1.03
USP4-213ENST00000488520 SLC7A5Q01650 507 aa8.6□□□□□ -1.03
USP4-213ENST00000488520 MTM1Q13496 603 aa8.6□□□□□ -1.03
USP4-213ENST00000488520 DOC2BQ14184 412 aa8.6□□□□□ -1.03
USP4-213ENST00000488520 POU6F1Q14863 301 aa8.6□□□□□ -1.03
USP4-213ENST00000488520 NKAIN2Q5VXU1 208 aa8.6□□□□□ -1.03
USP4-213ENST00000488520 HIST2H2BCQ6DN03 193 aa8.6□□□□□ -1.03
USP4-213ENST00000488520 SHISA2Q6UWI4 295 aa8.6□□□□□ -1.03
USP4-213ENST00000488520 TMC3Q7Z5M5 1100 aa8.6□□□□□ -1.03
USP4-213ENST00000488520 ZSWIM9Q86XI8 627 aa8.6□□□□□ -1.03
USP4-213ENST00000488520 PALM2Q8IXS6 379 aa8.6□□□□□ -1.03
USP4-213ENST00000488520 GABPB2Q8TAK5 448 aaPredicted RBP8.6□□□□□ -1.03
USP4-213ENST00000488520 STYXQ8WUJ0 223 aa8.6□□□□□ -1.03
USP4-213ENST00000488520 CPT1BQ92523 772 aa8.6□□□□□ -1.03
USP4-213ENST00000488520 UBXN4Q92575 508 aa8.6□□□□□ -1.03
USP4-213ENST00000488520 NUS1Q96E22 293 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms