RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 LDB2O43679 373 aa3.99□□□□□ -1.77
PTCD3-216ENST00000487043 PLPP2O43688 288 aa3.99□□□□□ -1.77
PTCD3-216ENST00000487043 FRAT2O75474 233 aaPredicted RBP3.99□□□□□ -1.77
PTCD3-216ENST00000487043 IDH1O75874 414 aaKnown RBP3.99□□□□□ -1.77
PTCD3-216ENST00000487043 UFL1O94874 794 aa3.99□□□□□ -1.77
PTCD3-216ENST00000487043 SLU7O95391 586 aaKnown RBP3.99□□□□□ -1.77
PTCD3-216ENST00000487043 TRUB2O95900 331 aaKnown RBP3.99□□□□□ -1.77
PTCD3-216ENST00000487043 GH2P01242 217 aa3.99□□□□□ -1.77
PTCD3-216ENST00000487043 IFNA2P01563 188 aa3.99□□□□□ -1.77
PTCD3-216ENST00000487043 KLKB1P03952 638 aa3.99□□□□□ -1.77
PTCD3-216ENST00000487043 FYNP06241 537 aa3.99□□□□□ -1.77
PTCD3-216ENST00000487043 ERCC2P18074 760 aa3.99□□□□□ -1.77
PTCD3-216ENST00000487043 MCCP23508 829 aa3.99□□□□□ -1.77
PTCD3-216ENST00000487043 HSPA4P34932 840 aa3.99□□□□□ -1.77
PTCD3-216ENST00000487043 GP5P40197 560 aa3.99□□□□□ -1.77
PTCD3-216ENST00000487043 CDH13P55290 713 aa3.99□□□□□ -1.77
PTCD3-216ENST00000487043 PLIN5Q00G26 463 aa3.99□□□□□ -1.77
PTCD3-216ENST00000487043 SPOCK1Q08629 439 aa3.99□□□□□ -1.77
PTCD3-216ENST00000487043 MYBPC2Q14324 1141 aa3.99□□□□□ -1.77
PTCD3-216ENST00000487043 NECTIN1Q15223 517 aa3.99□□□□□ -1.77
PTCD3-216ENST00000487043 Q5PR19 223 aa3.99□□□□□ -1.77
PTCD3-216ENST00000487043 WASHC2DQ5SRD0 308 aa3.99□□□□□ -1.77
PTCD3-216ENST00000487043 DCAF12L2Q5VW00 463 aa3.99□□□□□ -1.77
PTCD3-216ENST00000487043 NSUN5P2Q63ZY6 315 aa3.99□□□□□ -1.77
PTCD3-216ENST00000487043 DHRS7BQ6IAN0 325 aaPredicted RBP3.99□□□□□ -1.77
PTCD3-216ENST00000487043 CAVIN1Q6NZI2 390 aaKnown RBP3.99□□□□□ -1.77
PTCD3-216ENST00000487043 TRAT1Q6PIZ9 186 aa3.99□□□□□ -1.77
PTCD3-216ENST00000487043 SUSD1Q6UWL2 747 aa3.99□□□□□ -1.77
PTCD3-216ENST00000487043 OLFM4Q6UX06 510 aa3.99□□□□□ -1.77
PTCD3-216ENST00000487043 DEF8Q6ZN54 512 aa3.99□□□□□ -1.77
PTCD3-216ENST00000487043 RBPMS2Q6ZRY4 209 aaKnown RBP3.99□□□□□ -1.77
PTCD3-216ENST00000487043 RD3Q7Z3Z2 195 aa3.99□□□□□ -1.77
PTCD3-216ENST00000487043 FBXO39Q8N4B4 442 aa3.99□□□□□ -1.77
PTCD3-216ENST00000487043 MIGA1Q8NAN2 632 aa3.99□□□□□ -1.77
PTCD3-216ENST00000487043 XXYLT1Q8NBI6 393 aa3.99□□□□□ -1.77
PTCD3-216ENST00000487043 TSPAN14Q8NG11 270 aa3.99□□□□□ -1.77
PTCD3-216ENST00000487043 OR1J2Q8NGS2 313 aa3.99□□□□□ -1.77
PTCD3-216ENST00000487043 CFAP61Q8NHU2 1237 aa3.99□□□□□ -1.77
PTCD3-216ENST00000487043 DDB2Q92466 427 aa3.99□□□□□ -1.77
PTCD3-216ENST00000487043 APBB2Q92870 758 aa3.99□□□□□ -1.77
PTCD3-216ENST00000487043 CFAP57Q96MR6 1250 aa3.99□□□□□ -1.77
PTCD3-216ENST00000487043 THUMPD3Q9BV44 507 aaKnown RBP3.99□□□□□ -1.77
PTCD3-216ENST00000487043 COA1Q9GZY4 146 aa3.99□□□□□ -1.77
PTCD3-216ENST00000487043 LSG1Q9H089 658 aaKnown RBP3.99□□□□□ -1.77
PTCD3-216ENST00000487043 ISCUQ9H1K1 167 aa3.99□□□□□ -1.77
PTCD3-216ENST00000487043 VPS33BQ9H267 617 aa3.99□□□□□ -1.77
PTCD3-216ENST00000487043 KCNK15Q9H427 330 aa3.99□□□□□ -1.77
PTCD3-216ENST00000487043 CLK4Q9HAZ1 481 aaKnown RBP3.99□□□□□ -1.77
PTCD3-216ENST00000487043 SEBOXQ9HB31 216 aaPredicted RBP3.99□□□□□ -1.77
PTCD3-216ENST00000487043 CHMP1AQ9HD42 196 aaPredicted RBP3.99□□□□□ -1.77
PTCD3-216ENST00000487043 ABCF3Q9NUQ8 709 aa3.99□□□□□ -1.77
PTCD3-216ENST00000487043 OLAHQ9NV23 265 aa3.99□□□□□ -1.77
PTCD3-216ENST00000487043 LARSQ9P2J5 1176 aaKnown RBP3.99□□□□□ -1.77
PTCD3-216ENST00000487043 STK39Q9UEW8 545 aa3.99□□□□□ -1.77
PTCD3-216ENST00000487043 RASAL2Q9UJF2 1139 aa3.99□□□□□ -1.77
PTCD3-216ENST00000487043 PCDHA12Q9UN75 941 aa3.99□□□□□ -1.77
PTCD3-216ENST00000487043 SRPRBQ9Y5M8 271 aaKnown RBP3.99□□□□□ -1.77
PTCD3-216ENST00000487043 KIF13BQ9NQT8 1826 aa3.99□□□□□ -1.77
PTCD3-216ENST00000487043 LTBP1Q14766 1721 aa3.98□□□□□ -1.77
PTCD3-216ENST00000487043 CCDC171Q6TFL3 1326 aa3.98□□□□□ -1.77
PTCD3-216ENST00000487043 FAM205AQ6ZU69 1335 aa3.98□□□□□ -1.77
PTCD3-216ENST00000487043 ZNF532Q9HCE3 1301 aa3.98□□□□□ -1.77
PTCD3-216ENST00000487043 SLX4Q8IY92 1834 aa3.98□□□□□ -1.77
PTCD3-216ENST00000487043 SNED1Q8TER0 1413 aa3.98□□□□□ -1.77
PTCD3-216ENST00000487043 TMEM272A0A1B0GTI8 110 aa3.98□□□□□ -1.77
PTCD3-216ENST00000487043 EDDM13A0A1B0GTR0 161 aa3.98□□□□□ -1.77
PTCD3-216ENST00000487043 ARHGEF37A1IGU5 675 aa3.98□□□□□ -1.77
PTCD3-216ENST00000487043 GAGE12JA6NER3 117 aa3.98□□□□□ -1.77
PTCD3-216ENST00000487043 EIF4E1BA6NMX2 242 aaKnown RBP3.98□□□□□ -1.77
PTCD3-216ENST00000487043 B4DGG1 531 aa3.98□□□□□ -1.77
PTCD3-216ENST00000487043 E5RJQ4 531 aa3.98□□□□□ -1.77
PTCD3-216ENST00000487043 H0Y626 953 aa3.98□□□□□ -1.77
PTCD3-216ENST00000487043 J3KR12 359 aa3.98□□□□□ -1.77
PTCD3-216ENST00000487043 MAP2K7O14733 419 aa3.98□□□□□ -1.77
PTCD3-216ENST00000487043 ITM2AO43736 263 aa3.98□□□□□ -1.77
PTCD3-216ENST00000487043 NDUFB8O95169 186 aa3.98□□□□□ -1.77
PTCD3-216ENST00000487043 VPREB1P12018 145 aa3.98□□□□□ -1.77
PTCD3-216ENST00000487043 TLX1P31314 330 aaPredicted RBP3.98□□□□□ -1.77
PTCD3-216ENST00000487043 ANP32AP39687 249 aaKnown RBP3.98□□□□□ -1.77
PTCD3-216ENST00000487043 RAB28P51157 221 aa3.98□□□□□ -1.77
PTCD3-216ENST00000487043 ST3GAL1Q11201 340 aa3.98□□□□□ -1.77
PTCD3-216ENST00000487043 GPR18Q14330 331 aa3.98□□□□□ -1.77
PTCD3-216ENST00000487043 ZNF284Q2VY69 593 aa3.98□□□□□ -1.77
PTCD3-216ENST00000487043 CBWD6Q4V339 395 aa3.98□□□□□ -1.77
PTCD3-216ENST00000487043 FAM98BQ52LJ0 330 aaKnown RBP3.98□□□□□ -1.77
PTCD3-216ENST00000487043 CBWD3Q5JTY5 395 aa3.98□□□□□ -1.77
PTCD3-216ENST00000487043 DUS1LQ6P1R4 473 aaKnown RBP3.98□□□□□ -1.77
PTCD3-216ENST00000487043 SYCE2Q6PIF2 218 aa3.98□□□□□ -1.77
PTCD3-216ENST00000487043 PARM1Q6UWI2 310 aa3.98□□□□□ -1.77
PTCD3-216ENST00000487043 PET117Q6UWS5 81 aa3.98□□□□□ -1.77
PTCD3-216ENST00000487043 INTS8Q75QN2 995 aaKnown RBP3.98□□□□□ -1.77
PTCD3-216ENST00000487043 CTU1Q7Z7A3 348 aaKnown RBP3.98□□□□□ -1.77
PTCD3-216ENST00000487043 ZNF589Q86UQ0 364 aaPredicted RBP3.98□□□□□ -1.77
PTCD3-216ENST00000487043 ADIPOR2Q86V24 386 aa3.98□□□□□ -1.77
PTCD3-216ENST00000487043 CEP57Q86XR8 500 aa3.98□□□□□ -1.77
PTCD3-216ENST00000487043 ADGRG3Q86Y34 549 aa3.98□□□□□ -1.77
PTCD3-216ENST00000487043 CAMKVQ8NCB2 501 aa3.98□□□□□ -1.77
PTCD3-216ENST00000487043 PRSS3P2Q8NHM4 247 aa3.98□□□□□ -1.77
PTCD3-216ENST00000487043 SETD6Q8TBK2 473 aa3.98□□□□□ -1.77
PTCD3-216ENST00000487043 TMEM163Q8TC26 289 aa3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms