RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 DBF4BQ8NFT6 615 aa3.48□□□□□ -1.85
VPS41-213ENST00000485955 SCFD2Q8WU76 684 aa3.48□□□□□ -1.85
VPS41-213ENST00000485955 ANKRD9Q96BM1 317 aaPredicted RBP3.48□□□□□ -1.85
VPS41-213ENST00000485955 POM121L2Q96KW2 1035 aa3.48□□□□□ -1.85
VPS41-213ENST00000485955 FTOQ9C0B1 505 aaKnown RBP eCLIP3.48□□□□□ -1.85
VPS41-213ENST00000485955 PPIL3Q9H2H8 161 aaKnown RBP3.48□□□□□ -1.85
VPS41-213ENST00000485955 OLFML3Q9NRN5 406 aa3.48□□□□□ -1.85
VPS41-213ENST00000485955 LYVE1Q9Y5Y7 322 aa3.48□□□□□ -1.85
VPS41-213ENST00000485955 TDRD15B5MCY1 1934 aaKnown RBP3.47□□□□□ -1.85
VPS41-213ENST00000485955 PRSS51A0A1B0GVH4 220 aa3.47□□□□□ -1.85
VPS41-213ENST00000485955 MEIOCA2RUB1 952 aa3.47□□□□□ -1.85
VPS41-213ENST00000485955 PI4KAP2A4QPH2 592 aa3.47□□□□□ -1.85
VPS41-213ENST00000485955 PGPEP1LA6NFU8 196 aa3.47□□□□□ -1.85
VPS41-213ENST00000485955 DNM1LO00429 736 aa3.47□□□□□ -1.85
VPS41-213ENST00000485955 ZNF197O14709 1029 aa3.47□□□□□ -1.85
VPS41-213ENST00000485955 EPB41L2O43491 1005 aaKnown RBP3.47□□□□□ -1.85
VPS41-213ENST00000485955 TRMUO75648 421 aaKnown RBP3.47□□□□□ -1.85
VPS41-213ENST00000485955 ZFAND5O76080 213 aa3.47□□□□□ -1.85
VPS41-213ENST00000485955 HADHAP40939 763 aa3.47□□□□□ -1.85
VPS41-213ENST00000485955 GARSP41250 739 aaKnown RBP3.47□□□□□ -1.85
VPS41-213ENST00000485955 RPS18P62269 152 aaKnown RBP3.47□□□□□ -1.85
VPS41-213ENST00000485955 LGALS3BPQ08380 585 aa3.47□□□□□ -1.85
VPS41-213ENST00000485955 PNRC1Q12796 327 aaPredicted RBP3.47□□□□□ -1.85
VPS41-213ENST00000485955 CRYMQ14894 314 aa3.47□□□□□ -1.85
VPS41-213ENST00000485955 P2RY6Q15077 328 aa3.47□□□□□ -1.85
VPS41-213ENST00000485955 GTDC1Q4AE62 458 aa3.47□□□□□ -1.85
VPS41-213ENST00000485955 ADALQ6DHV7 355 aa3.47□□□□□ -1.85
VPS41-213ENST00000485955 TMEM154Q6P9G4 183 aa3.47□□□□□ -1.85
VPS41-213ENST00000485955 SLC16A9Q7RTY1 509 aa3.47□□□□□ -1.85
VPS41-213ENST00000485955 GALNT5Q7Z7M9 940 aa3.47□□□□□ -1.85
VPS41-213ENST00000485955 TEX11Q8IYF3 940 aa3.47□□□□□ -1.85
VPS41-213ENST00000485955 SCML4Q8N228 414 aa3.47□□□□□ -1.85
VPS41-213ENST00000485955 HSD17B8Q92506 261 aa3.47□□□□□ -1.85
VPS41-213ENST00000485955 PGAM5Q96HS1 289 aa3.47□□□□□ -1.85
VPS41-213ENST00000485955 GMPPAQ96IJ6 420 aaPredicted RBP3.47□□□□□ -1.85
VPS41-213ENST00000485955 FAM81BQ96LP2 452 aa3.47□□□□□ -1.85
VPS41-213ENST00000485955 LINC00479Q96M42 142 aa3.47□□□□□ -1.85
VPS41-213ENST00000485955 OPRPNQ99935 248 aaPredicted RBP3.47□□□□□ -1.85
VPS41-213ENST00000485955 ABHD6Q9BV23 337 aa3.47□□□□□ -1.85
VPS41-213ENST00000485955 CDK19Q9BWU1 502 aa3.47□□□□□ -1.85
VPS41-213ENST00000485955 WDR13Q9H1Z4 485 aa3.47□□□□□ -1.85
VPS41-213ENST00000485955 ATAD3AQ9NVI7 634 aa3.47□□□□□ -1.85
VPS41-213ENST00000485955 BCCIPQ9P287 314 aaKnown RBP eCLIP3.47□□□□□ -1.85
VPS41-213ENST00000485955 SLC7A7Q9UM01 511 aa3.47□□□□□ -1.85
VPS41-213ENST00000485955 SPIN1Q9Y657 262 aaPredicted RBP3.47□□□□□ -1.85
VPS41-213ENST00000485955 PRSS21Q9Y6M0 314 aa3.47□□□□□ -1.85
VPS41-213ENST00000485955 RNF215Q9Y6U7 377 aa3.47□□□□□ -1.85
VPS41-213ENST00000485955 SCRIBQ14160 1630 aa3.47□□□□□ -1.85
VPS41-213ENST00000485955 CHD1O14646 1710 aa3.47□□□□□ -1.85
VPS41-213ENST00000485955 GIMAP1-GIMAP5A0A087WTJ2 511 aa3.46□□□□□ -1.86
VPS41-213ENST00000485955 IGHV4-61A0A0C4DH41 118 aa3.46□□□□□ -1.86
VPS41-213ENST00000485955 ELOVL7A1L3X0 281 aa3.46□□□□□ -1.86
VPS41-213ENST00000485955 TCERG1O14776 1098 aaKnown RBP3.46□□□□□ -1.86
VPS41-213ENST00000485955 SCGB1D1O95968 90 aa3.46□□□□□ -1.86
VPS41-213ENST00000485955 IGHV4-59P01825 116 aa3.46□□□□□ -1.86
VPS41-213ENST00000485955 RB1P06400 928 aa3.46□□□□□ -1.86
VPS41-213ENST00000485955 TPOP07202 933 aa3.46□□□□□ -1.86
VPS41-213ENST00000485955 PRLRP16471 622 aa3.46□□□□□ -1.86
VPS41-213ENST00000485955 TNFAIP3P21580 790 aa3.46□□□□□ -1.86
VPS41-213ENST00000485955 BMXP51813 675 aa3.46□□□□□ -1.86
VPS41-213ENST00000485955 KCNJ10P78508 379 aa3.46□□□□□ -1.86
VPS41-213ENST00000485955 MRPS5P82675 430 aaKnown RBP3.46□□□□□ -1.86
VPS41-213ENST00000485955 IRF3Q14653 427 aa3.46□□□□□ -1.86
VPS41-213ENST00000485955 DCAF10Q5QP82 559 aa3.46□□□□□ -1.86
VPS41-213ENST00000485955 CCDC30Q5VVM6 783 aa3.46□□□□□ -1.86
VPS41-213ENST00000485955 TMED8Q6PL24 325 aaPredicted RBP3.46□□□□□ -1.86
VPS41-213ENST00000485955 TTC39CQ8N584 583 aa3.46□□□□□ -1.86
VPS41-213ENST00000485955 OR2T6Q8NHC8 308 aa3.46□□□□□ -1.86
VPS41-213ENST00000485955 ERLEC1Q96DZ1 483 aa3.46□□□□□ -1.86
VPS41-213ENST00000485955 GIMAP5Q96F15 307 aa3.46□□□□□ -1.86
VPS41-213ENST00000485955 MYADMQ96S97 322 aa3.46□□□□□ -1.86
VPS41-213ENST00000485955 ATOH8Q96SQ7 321 aa3.46□□□□□ -1.86
VPS41-213ENST00000485955 C16orf70Q9BSU1 422 aa3.46□□□□□ -1.86
VPS41-213ENST00000485955 TRAF4Q9BUZ4 470 aaPredicted RBP3.46□□□□□ -1.86
VPS41-213ENST00000485955 C1QTNF1Q9BXJ1 281 aa3.46□□□□□ -1.86
VPS41-213ENST00000485955 HHATLQ9HCP6 504 aa3.46□□□□□ -1.86
VPS41-213ENST00000485955 ACKR4Q9NPB9 350 aa3.46□□□□□ -1.86
VPS41-213ENST00000485955 KRT84Q9NSB2 600 aa3.46□□□□□ -1.86
VPS41-213ENST00000485955 ZDHHC18Q9NUE0 388 aa3.46□□□□□ -1.86
VPS41-213ENST00000485955 BARHL2Q9NY43 387 aa3.46□□□□□ -1.86
VPS41-213ENST00000485955 TAS2R14Q9NYV8 317 aa3.46□□□□□ -1.86
VPS41-213ENST00000485955 RHCGQ9UBD6 479 aa3.46□□□□□ -1.86
VPS41-213ENST00000485955 SYNJ2O15056 1496 aa3.46□□□□□ -1.86
VPS41-213ENST00000485955 ASTN2O75129 1339 aaPredicted RBP3.45□□□□□ -1.86
VPS41-213ENST00000485955 SRCAPQ6ZRS2 3230 aa3.45□□□□□ -1.86
VPS41-213ENST00000485955 PCNX3Q9H6A9 2034 aa3.45□□□□□ -1.86
VPS41-213ENST00000485955 E9PI62 339 aa3.45□□□□□ -1.86
VPS41-213ENST00000485955 ARHGEF9O43307 516 aa3.45□□□□□ -1.86
VPS41-213ENST00000485955 PTP4A3O75365 173 aa3.45□□□□□ -1.86
VPS41-213ENST00000485955 SORBS2O94875 1100 aaKnown RBP3.45□□□□□ -1.86
VPS41-213ENST00000485955 RAF1P04049 648 aa3.45□□□□□ -1.86
VPS41-213ENST00000485955 HMBSP08397 361 aa3.45□□□□□ -1.86
VPS41-213ENST00000485955 FAM157CP0CG43 387 aa3.45□□□□□ -1.86
VPS41-213ENST00000485955 ACADMP11310 421 aa3.45□□□□□ -1.86
VPS41-213ENST00000485955 MMP9P14780 707 aa3.45□□□□□ -1.86
VPS41-213ENST00000485955 DCAF7P61962 342 aa3.45□□□□□ -1.86
VPS41-213ENST00000485955 SNRPEP62304 92 aaKnown RBP3.45□□□□□ -1.86
VPS41-213ENST00000485955 PPARDQ03181 441 aa3.45□□□□□ -1.86
VPS41-213ENST00000485955 PLA2G7Q13093 441 aa3.45□□□□□ -1.86
VPS41-213ENST00000485955 KCNC3Q14003 757 aa3.45□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms