RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 RMDN2Q96LZ7 410 aa11.83□□□□□ -0.52
SQSTM1-207ENST00000481335 LRFN5Q96NI6 719 aa11.83□□□□□ -0.52
SQSTM1-207ENST00000481335 MAP3K3Q99759 626 aa11.83□□□□□ -0.52
SQSTM1-207ENST00000481335 APOL2Q9BQE5 337 aa11.83□□□□□ -0.52
SQSTM1-207ENST00000481335 C10orf88Q9H8K7 445 aa11.83□□□□□ -0.52
SQSTM1-207ENST00000481335 FANCEQ9HB96 536 aa11.83□□□□□ -0.52
SQSTM1-207ENST00000481335 C1GALT1Q9NS00 363 aa11.83□□□□□ -0.52
SQSTM1-207ENST00000481335 FGF21Q9NSA1 209 aa11.83□□□□□ -0.52
SQSTM1-207ENST00000481335 NLE1Q9NVX2 485 aaPredicted RBP11.83□□□□□ -0.52
SQSTM1-207ENST00000481335 HRASLS2Q9NWW9 162 aa11.83□□□□□ -0.52
SQSTM1-207ENST00000481335 F8W8V4 182 aa11.82□□□□□ -0.52
SQSTM1-207ENST00000481335 CREG1O75629 220 aa11.82□□□□□ -0.52
SQSTM1-207ENST00000481335 PRKAR1AP10644 381 aa11.82□□□□□ -0.52
SQSTM1-207ENST00000481335 CDC25BP30305 580 aa11.82□□□□□ -0.52
SQSTM1-207ENST00000481335 STIP1P31948 543 aaKnown RBP11.82□□□□□ -0.52
SQSTM1-207ENST00000481335 NSG1P42857 185 aa11.82□□□□□ -0.52
SQSTM1-207ENST00000481335 PPP1CAP62136 330 aa11.82□□□□□ -0.52
SQSTM1-207ENST00000481335 PLOD1Q02809 727 aaPredicted RBP11.82□□□□□ -0.52
SQSTM1-207ENST00000481335 CACNG1Q06432 222 aa11.82□□□□□ -0.52
SQSTM1-207ENST00000481335 OLIG2Q13516 323 aa11.82□□□□□ -0.52
SQSTM1-207ENST00000481335 DNASE1L3Q13609 305 aa11.82□□□□□ -0.52
SQSTM1-207ENST00000481335 KRT33BQ14525 404 aa11.82□□□□□ -0.52
SQSTM1-207ENST00000481335 ITIH4Q14624 930 aa11.82□□□□□ -0.52
SQSTM1-207ENST00000481335 GSE1Q14687 1217 aa11.82□□□□□ -0.52
SQSTM1-207ENST00000481335 ZNF658BQ4V348 819 aaPredicted RBP11.82□□□□□ -0.52
SQSTM1-207ENST00000481335 TMEM139Q8IV31 216 aa11.82□□□□□ -0.52
SQSTM1-207ENST00000481335 CFAP206Q8IYR0 622 aa11.82□□□□□ -0.52
SQSTM1-207ENST00000481335 RNF10Q8N5U6 811 aaKnown RBP11.82□□□□□ -0.52
SQSTM1-207ENST00000481335 ACRBPQ8NEB7 543 aa11.82□□□□□ -0.52
SQSTM1-207ENST00000481335 SLC35B2Q8TB61 432 aa11.82□□□□□ -0.52
SQSTM1-207ENST00000481335 HES6Q96HZ4 224 aa11.82□□□□□ -0.52
SQSTM1-207ENST00000481335 RBSNQ9H1K0 784 aa11.82□□□□□ -0.52
SQSTM1-207ENST00000481335 TFB2MQ9H5Q4 396 aaKnown RBP11.82□□□□□ -0.52
SQSTM1-207ENST00000481335 MVB12BQ9H7P6 319 aa11.82□□□□□ -0.52
SQSTM1-207ENST00000481335 COG4Q9H9E3 785 aa11.82□□□□□ -0.52
SQSTM1-207ENST00000481335 POMT2Q9UKY4 750 aa11.82□□□□□ -0.52
SQSTM1-207ENST00000481335 RIMKLBQ9ULI2 386 aa11.82□□□□□ -0.52
SQSTM1-207ENST00000481335 KCNMB2Q9Y691 235 aa11.82□□□□□ -0.52
SQSTM1-207ENST00000481335 CFAP20Q9Y6A4 193 aaKnown RBP11.82□□□□□ -0.52
SQSTM1-207ENST00000481335 PTPN13Q12923 2485 aa11.82□□□□□ -0.52
SQSTM1-207ENST00000481335 SPTBP11277 2137 aa11.81□□□□□ -0.52
SQSTM1-207ENST00000481335 NBASA2RRP1 2371 aa11.81□□□□□ -0.52
SQSTM1-207ENST00000481335 OR6C74A6NCV1 312 aa11.81□□□□□ -0.52
SQSTM1-207ENST00000481335 MKRN2OSH3BPM6 223 aa11.81□□□□□ -0.52
SQSTM1-207ENST00000481335 LIN7AO14910 233 aaPredicted RBP11.81□□□□□ -0.52
SQSTM1-207ENST00000481335 DDX3YO15523 660 aaKnown RBP11.81□□□□□ -0.52
SQSTM1-207ENST00000481335 MAP3K7O43318 606 aa11.81□□□□□ -0.52
SQSTM1-207ENST00000481335 ZIC2O95409 532 aaPredicted RBP11.81□□□□□ -0.52
SQSTM1-207ENST00000481335 GAS8O95995 478 aa11.81□□□□□ -0.52
SQSTM1-207ENST00000481335 FOLR1P15328 257 aa11.81□□□□□ -0.52
SQSTM1-207ENST00000481335 F8A1P23610 371 aa11.81□□□□□ -0.52
SQSTM1-207ENST00000481335 CASRP41180 1078 aa11.81□□□□□ -0.52
SQSTM1-207ENST00000481335 KPNA2P52292 529 aaKnown RBP11.81□□□□□ -0.52
SQSTM1-207ENST00000481335 GSDMDP57764 484 aa11.81□□□□□ -0.52
SQSTM1-207ENST00000481335 SKIDA1Q1XH10 827 aa11.81□□□□□ -0.52
SQSTM1-207ENST00000481335 DEFB109BQ30KR1 87 aa11.81□□□□□ -0.52
SQSTM1-207ENST00000481335 LACTB2Q53H82 288 aaPredicted RBP11.81□□□□□ -0.52
SQSTM1-207ENST00000481335 PWWP2BQ6NUJ5 590 aa11.81□□□□□ -0.52
SQSTM1-207ENST00000481335 TCTN3Q6NUS6 607 aa11.81□□□□□ -0.52
SQSTM1-207ENST00000481335 AADACL2Q6P093 401 aa11.81□□□□□ -0.52
SQSTM1-207ENST00000481335 C16orf46Q6P387 395 aa11.81□□□□□ -0.52
SQSTM1-207ENST00000481335 PACS1Q6VY07 963 aa11.81□□□□□ -0.52
SQSTM1-207ENST00000481335 ZNF517Q6ZMY9 492 aaPredicted RBP11.81□□□□□ -0.52
SQSTM1-207ENST00000481335 SYVN1Q86TM6 617 aa11.81□□□□□ -0.52
SQSTM1-207ENST00000481335 APLFQ8IW19 511 aaPredicted RBP11.81□□□□□ -0.52
SQSTM1-207ENST00000481335 FAM71DQ8N9W8 422 aa11.81□□□□□ -0.52
SQSTM1-207ENST00000481335 SPDYE1Q8NFV5 336 aaPredicted RBP11.81□□□□□ -0.52
SQSTM1-207ENST00000481335 THAP4Q8WY91 577 aa11.81□□□□□ -0.52
SQSTM1-207ENST00000481335 PEX13Q92968 403 aa11.81□□□□□ -0.52
SQSTM1-207ENST00000481335 TBRG4Q969Z0 631 aaKnown RBP eCLIP11.81□□□□□ -0.521e-7■■■□□ 14.6
SQSTM1-207ENST00000481335 ZNF501Q96CX3 271 aaPredicted RBP11.81□□□□□ -0.52
SQSTM1-207ENST00000481335 CDKN2AIPNLQ96HQ2 116 aa11.81□□□□□ -0.52
SQSTM1-207ENST00000481335 DNAJC1Q96KC8 554 aaKnown RBP11.81□□□□□ -0.52
SQSTM1-207ENST00000481335 ALS2CR12Q96Q35 445 aa11.81□□□□□ -0.52
SQSTM1-207ENST00000481335 TSGA10Q9BZW7 698 aa11.81□□□□□ -0.52
SQSTM1-207ENST00000481335 OR52A5Q9H2C5 316 aa11.81□□□□□ -0.52
SQSTM1-207ENST00000481335 MROH6A6NGR9 719 aa11.8□□□□□ -0.52
SQSTM1-207ENST00000481335 GOLGA6L6A8MZA4 724 aa11.8□□□□□ -0.52
SQSTM1-207ENST00000481335 KDM1AO60341 852 aa11.8□□□□□ -0.52
SQSTM1-207ENST00000481335 RFPL1O75677 317 aa11.8□□□□□ -0.52
SQSTM1-207ENST00000481335 SCRG1O75711 98 aa11.8□□□□□ -0.52
SQSTM1-207ENST00000481335 TIAF1O95411 115 aa11.8□□□□□ -0.52
SQSTM1-207ENST00000481335 METTL18O95568 372 aa11.8□□□□□ -0.52
SQSTM1-207ENST00000481335 FTH1P02794 183 aa11.8□□□□□ -0.52
SQSTM1-207ENST00000481335 KLK3P07288 261 aaPredicted RBP11.8□□□□□ -0.52
SQSTM1-207ENST00000481335 EBLN1P0CF75 366 aa11.8□□□□□ -0.52
SQSTM1-207ENST00000481335 CDH3P22223 829 aa11.8□□□□□ -0.52
SQSTM1-207ENST00000481335 FDFT1P37268 417 aa11.8□□□□□ -0.52
SQSTM1-207ENST00000481335 PMS2P54278 862 aa11.8□□□□□ -0.52
SQSTM1-207ENST00000481335 RPS15P62841 145 aaKnown RBP11.8□□□□□ -0.52
SQSTM1-207ENST00000481335 TMPRSS15P98073 1019 aa11.8□□□□□ -0.52
SQSTM1-207ENST00000481335 TLE1Q04724 770 aa11.8□□□□□ -0.52
SQSTM1-207ENST00000481335 CDH17Q12864 832 aa11.8□□□□□ -0.52
SQSTM1-207ENST00000481335 ZRANB3Q5FWF4 1079 aa11.8□□□□□ -0.52
SQSTM1-207ENST00000481335 SEL1L2Q5TEA6 688 aa11.8□□□□□ -0.52
SQSTM1-207ENST00000481335 LYPLAL1Q5VWZ2 237 aa11.8□□□□□ -0.52
SQSTM1-207ENST00000481335 IZUMO3Q5VZ72 239 aa11.8□□□□□ -0.52
SQSTM1-207ENST00000481335 DUS1LQ6P1R4 473 aaKnown RBP11.8□□□□□ -0.52
SQSTM1-207ENST00000481335 SERPINA9Q86WD7 417 aa11.8□□□□□ -0.52
SQSTM1-207ENST00000481335 TMEM126BQ8IUX1 230 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms