RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 PER3P56645 1201 aa5.15□□□□□ -1.59
PTPN4-209ENST00000469511 RPL7AP62424 266 aaKnown RBP5.15□□□□□ -1.59
PTPN4-209ENST00000469511 POLR2LP62875 67 aaKnown RBP5.15□□□□□ -1.59
PTPN4-209ENST00000469511 ADORA2A-AS1P86434 159 aa5.15□□□□□ -1.59
PTPN4-209ENST00000469511 NSUN2Q08J23 767 aaKnown RBP eCLIP5.15□□□□□ -1.59
PTPN4-209ENST00000469511 Q0VFX4 171 aa5.15□□□□□ -1.59
PTPN4-209ENST00000469511 LRP8Q14114 963 aa5.15□□□□□ -1.59
PTPN4-209ENST00000469511 MYBPC3Q14896 1274 aa5.15□□□□□ -1.59
PTPN4-209ENST00000469511 KIR2DS5Q14953 304 aa5.15□□□□□ -1.59
PTPN4-209ENST00000469511 CAMK4Q16566 473 aa5.15□□□□□ -1.59
PTPN4-209ENST00000469511 KHDC1Q4VXA5 237 aaKnown RBP5.15□□□□□ -1.59
PTPN4-209ENST00000469511 ZNF789Q5FWF6 425 aa5.15□□□□□ -1.59
PTPN4-209ENST00000469511 ZFYVE27Q5T4F4 411 aa5.15□□□□□ -1.59
PTPN4-209ENST00000469511 ARMC12Q5T9G4 340 aa5.15□□□□□ -1.59
PTPN4-209ENST00000469511 VWA5B1Q5TIE3 1220 aa5.15□□□□□ -1.59
PTPN4-209ENST00000469511 IZUMO3Q5VZ72 239 aa5.15□□□□□ -1.59
PTPN4-209ENST00000469511 FBXW10Q5XX13 1052 aa5.15□□□□□ -1.59
PTPN4-209ENST00000469511 ATL3Q6DD88 541 aa5.15□□□□□ -1.59
PTPN4-209ENST00000469511 CRTC3Q6UUV7 619 aa5.15□□□□□ -1.59
PTPN4-209ENST00000469511 GBP6Q6ZN66 633 aa5.15□□□□□ -1.59
PTPN4-209ENST00000469511 ENOSF1Q7L5Y1 443 aa5.15□□□□□ -1.59
PTPN4-209ENST00000469511 ARCQ7LC44 396 aa5.15□□□□□ -1.59
PTPN4-209ENST00000469511 STRADAQ7RTN6 431 aa5.15□□□□□ -1.59
PTPN4-209ENST00000469511 MRGPRGQ86SM5 289 aa5.15□□□□□ -1.59
PTPN4-209ENST00000469511 CDH24Q86UP0 819 aa5.15□□□□□ -1.59
PTPN4-209ENST00000469511 TMEM126BQ8IUX1 230 aa5.15□□□□□ -1.59
PTPN4-209ENST00000469511 NXPE1Q8N323 547 aa5.15□□□□□ -1.59
PTPN4-209ENST00000469511 GALNT16Q8N428 558 aa5.15□□□□□ -1.59
PTPN4-209ENST00000469511 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP5.15□□□□□ -1.59
PTPN4-209ENST00000469511 FAM169BQ8N8A8 192 aa5.15□□□□□ -1.59
PTPN4-209ENST00000469511 EXD1Q8NHP7 514 aa5.15□□□□□ -1.59
PTPN4-209ENST00000469511 FAR1Q8WVX9 515 aa5.15□□□□□ -1.59
PTPN4-209ENST00000469511 EID2BQ96D98 161 aa5.15□□□□□ -1.59
PTPN4-209ENST00000469511 ZNF514Q96K75 400 aaPredicted RBP5.15□□□□□ -1.59
PTPN4-209ENST00000469511 TRAPPC9Q96Q05 1148 aa5.15□□□□□ -1.59
PTPN4-209ENST00000469511 MCCC1Q96RQ3 725 aaPredicted RBP5.15□□□□□ -1.59
PTPN4-209ENST00000469511 PEBP4Q96S96 227 aa5.15□□□□□ -1.59
PTPN4-209ENST00000469511 MESP1Q9BRJ9 268 aa5.15□□□□□ -1.59
PTPN4-209ENST00000469511 HERPUD2Q9BSE4 406 aa5.15□□□□□ -1.59
PTPN4-209ENST00000469511 TMEM121Q9BTD3 319 aa5.15□□□□□ -1.59
PTPN4-209ENST00000469511 LDHAL6BQ9BYZ2 381 aaPredicted RBP5.15□□□□□ -1.59
PTPN4-209ENST00000469511 PDCL3Q9H2J4 239 aa5.15□□□□□ -1.59
PTPN4-209ENST00000469511 RETREG1Q9H6L5 497 aa5.15□□□□□ -1.59
PTPN4-209ENST00000469511 ACSS3Q9H6R3 686 aa5.15□□□□□ -1.59
PTPN4-209ENST00000469511 PDE7BQ9NP56 450 aa5.15□□□□□ -1.59
PTPN4-209ENST00000469511 SLC40A1Q9NP59 571 aa5.15□□□□□ -1.59
PTPN4-209ENST00000469511 WASH6PQ9NQA3 447 aa5.15□□□□□ -1.59
PTPN4-209ENST00000469511 KCND1Q9NSA2 647 aa5.15□□□□□ -1.59
PTPN4-209ENST00000469511 FAM207AQ9NSI2 230 aaPredicted RBP5.15□□□□□ -1.59
PTPN4-209ENST00000469511 PCMTD2Q9NV79 361 aa5.15□□□□□ -1.59
PTPN4-209ENST00000469511 ETNK2Q9NVF9 386 aa5.15□□□□□ -1.59
PTPN4-209ENST00000469511 C5AR2Q9P296 337 aa5.15□□□□□ -1.59
PTPN4-209ENST00000469511 SH3BGRL2Q9UJC5 107 aa5.15□□□□□ -1.59
PTPN4-209ENST00000469511 PHTF1Q9UMS5 762 aa5.15□□□□□ -1.59
PTPN4-209ENST00000469511 FHOD1Q9Y613 1164 aa5.15□□□□□ -1.59
PTPN4-209ENST00000469511 CSPG4Q6UVK1 2322 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 FLNAP21333 2647 aaKnown RBP5.14□□□□□ -1.59
PTPN4-209ENST00000469511 TCRBV5S1A1TA0A578 114 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 PSMD11O00231 422 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 PSMA7O14818 248 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 TOX3O15405 576 aaPredicted RBP5.14□□□□□ -1.59
PTPN4-209ENST00000469511 ZNHIT1O43257 154 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 HCRTR1O43613 425 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 LDB2O43679 373 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 JRKO75564 520 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 PRLP01236 227 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 JCHAINP01591 159 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 CYP1A1P04798 512 aaPredicted RBP5.14□□□□□ -1.59
PTPN4-209ENST00000469511 RAB40ALP0C0E4 278 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 CBSLP0DN79 551 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 ERCC2P18074 760 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 GPD1P21695 349 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 MMP8P22894 467 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 PTGER4P35408 488 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 CBSP35520 551 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 TDGF1P3P51864 188 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 STC1P52823 247 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 SNX16P57768 344 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 TPI1P60174 286 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 FMO1Q01740 532 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 IL10RBQ08334 325 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 PEX6Q13608 980 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 ZNF235Q14590 738 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 EXOC3L4Q17RC7 722 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 TDRD12Q587J7 1177 aaKnown RBP5.14□□□□□ -1.59
PTPN4-209ENST00000469511 DCAF10Q5QP82 559 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 LYPLAL1Q5VWZ2 237 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 ZNF324BQ6AW86 544 aaPredicted RBP5.14□□□□□ -1.59
PTPN4-209ENST00000469511 PLEKHA7Q6IQ23 1121 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 Q71RC1 249 aaPredicted RBP5.14□□□□□ -1.59
PTPN4-209ENST00000469511 MED25Q71SY5 747 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 NLRC3Q7RTR2 1065 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 MRGPREQ86SM8 312 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 ADGRG6Q86SQ4 1221 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 ZNF547Q8IVP9 402 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 D2HGDHQ8N465 521 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 ZADH2Q8N4Q0 377 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 LZTR1Q8N653 840 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 OR1L3Q8NH93 324 aa5.14□□□□□ -1.59
PTPN4-209ENST00000469511 NAT14Q8WUY8 206 aa5.14□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms