RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 ERV3-1Q14264 604 aa16.15■□□□□ 0.18
CCDC28B-204ENST00000469003 GSE1Q14687 1217 aa16.15■□□□□ 0.18
CCDC28B-204ENST00000469003 PARP6Q2NL67 630 aa16.15■□□□□ 0.18
CCDC28B-204ENST00000469003 CERS6Q6ZMG9 384 aa16.15■□□□□ 0.18
CCDC28B-204ENST00000469003 ARHGEF18Q6ZSZ5 1173 aa16.15■□□□□ 0.18
CCDC28B-204ENST00000469003 PEX26Q7Z412 305 aa16.15■□□□□ 0.18
CCDC28B-204ENST00000469003 UBL4BQ8N7F7 174 aa16.15■□□□□ 0.18
CCDC28B-204ENST00000469003 CT55Q8WUE5 264 aa16.15■□□□□ 0.18
CCDC28B-204ENST00000469003 ABHD17AQ96GS6 310 aa16.15■□□□□ 0.18
CCDC28B-204ENST00000469003 DNAJC1Q96KC8 554 aaKnown RBP16.15■□□□□ 0.18
CCDC28B-204ENST00000469003 ZDHHC3Q9NYG2 299 aa16.15■□□□□ 0.18
CCDC28B-204ENST00000469003 ANAPC2Q9UJX6 822 aa16.15■□□□□ 0.18
CCDC28B-204ENST00000469003 POLHQ9Y253 713 aa16.15■□□□□ 0.18
CCDC28B-204ENST00000469003 KCNMB2Q9Y691 235 aa16.15■□□□□ 0.18
CCDC28B-204ENST00000469003 IGLV3-16A0A075B6K0 115 aa16.14■□□□□ 0.17
CCDC28B-204ENST00000469003 TRBV5-4A0A0C4DH59 114 aa16.14■□□□□ 0.17
CCDC28B-204ENST00000469003 MIF4GDA9UHW6 222 aaKnown RBP16.14■□□□□ 0.17
CCDC28B-204ENST00000469003 H7C0S8 307 aa16.14■□□□□ 0.17
CCDC28B-204ENST00000469003 CCL22O00626 93 aa16.14■□□□□ 0.17
CCDC28B-204ENST00000469003 CREG1O75629 220 aa16.14■□□□□ 0.17
CCDC28B-204ENST00000469003 PTMAP06454 111 aaKnown RBP16.14■□□□□ 0.17
CCDC28B-204ENST00000469003 FURINP09958 794 aa16.14■□□□□ 0.17
CCDC28B-204ENST00000469003 KPNA2P52292 529 aaKnown RBP16.14■□□□□ 0.17
CCDC28B-204ENST00000469003 TUBB4BP68371 445 aa16.14■□□□□ 0.17
CCDC28B-204ENST00000469003 TUBB2AQ13885 445 aa16.14■□□□□ 0.17
CCDC28B-204ENST00000469003 KRT33BQ14525 404 aa16.14■□□□□ 0.17
CCDC28B-204ENST00000469003 SKIDA1Q1XH10 827 aa16.14■□□□□ 0.17
CCDC28B-204ENST00000469003 COLEC12Q5KU26 742 aa16.14■□□□□ 0.17
CCDC28B-204ENST00000469003 SYCE1Q8N0S2 351 aa16.14■□□□□ 0.17
CCDC28B-204ENST00000469003 FAM71DQ8N9W8 422 aa16.14■□□□□ 0.17
CCDC28B-204ENST00000469003 ACVR1CQ8NER5 493 aa16.14■□□□□ 0.17
CCDC28B-204ENST00000469003 BAG1Q99933 345 aaPredicted RBP16.14■□□□□ 0.17
CCDC28B-204ENST00000469003 TUBB2BQ9BVA1 445 aa16.14■□□□□ 0.17
CCDC28B-204ENST00000469003 LRRC40Q9H9A6 602 aa16.14■□□□□ 0.17
CCDC28B-204ENST00000469003 COG4Q9H9E3 785 aa16.14■□□□□ 0.17
CCDC28B-204ENST00000469003 ZNF71Q9NQZ8 489 aaPredicted RBP16.14■□□□□ 0.17
CCDC28B-204ENST00000469003 NLE1Q9NVX2 485 aaPredicted RBP16.14■□□□□ 0.17
CCDC28B-204ENST00000469003 LRRK2Q5S007 2527 aa16.13■□□□□ 0.17
CCDC28B-204ENST00000469003 TEX15Q9BXT5 2789 aa16.13■□□□□ 0.17
CCDC28B-204ENST00000469003 MATN2O00339 956 aa16.13■□□□□ 0.17
CCDC28B-204ENST00000469003 METTL18O95568 372 aa16.13■□□□□ 0.17
CCDC28B-204ENST00000469003 NTRK1P04629 796 aa16.13■□□□□ 0.17
CCDC28B-204ENST00000469003 POLR2CP19387 275 aaPredicted RBP16.13■□□□□ 0.17
CCDC28B-204ENST00000469003 ACRV1P26436 265 aa16.13■□□□□ 0.17
CCDC28B-204ENST00000469003 CASRP41180 1078 aa16.13■□□□□ 0.17
CCDC28B-204ENST00000469003 ARCN1P48444 511 aaKnown RBP16.13■□□□□ 0.17
CCDC28B-204ENST00000469003 CDKN1CP49918 316 aaPredicted RBP16.13■□□□□ 0.17
CCDC28B-204ENST00000469003 PRKAA1Q13131 559 aa16.13■□□□□ 0.17
CCDC28B-204ENST00000469003 KLF1Q13351 362 aaPredicted RBP16.13■□□□□ 0.17
CCDC28B-204ENST00000469003 P3H1Q32P28 736 aa16.13■□□□□ 0.17
CCDC28B-204ENST00000469003 ZNF658BQ4V348 819 aaPredicted RBP16.13■□□□□ 0.17
CCDC28B-204ENST00000469003 LACTB2Q53H82 288 aaPredicted RBP16.13■□□□□ 0.17
CCDC28B-204ENST00000469003 ZRANB3Q5FWF4 1079 aa16.13■□□□□ 0.17
CCDC28B-204ENST00000469003 TMTC4Q5T4D3 741 aa16.13■□□□□ 0.17
CCDC28B-204ENST00000469003 SERPINA9Q86WD7 417 aa16.13■□□□□ 0.17
CCDC28B-204ENST00000469003 TMEM139Q8IV31 216 aa16.13■□□□□ 0.17
CCDC28B-204ENST00000469003 OR4E2Q8NGC2 313 aa16.13■□□□□ 0.17
CCDC28B-204ENST00000469003 OR8K5Q8NH50 307 aa16.13■□□□□ 0.17
CCDC28B-204ENST00000469003 ZNF501Q96CX3 271 aaPredicted RBP16.13■□□□□ 0.17
CCDC28B-204ENST00000469003 TWSG1Q9GZX9 223 aa16.13■□□□□ 0.17
CCDC28B-204ENST00000469003 EPN3Q9H201 632 aa16.13■□□□□ 0.17
CCDC28B-204ENST00000469003 OR52A5Q9H2C5 316 aa16.13■□□□□ 0.17
CCDC28B-204ENST00000469003 VPS37BQ9H9H4 285 aa16.13■□□□□ 0.17
CCDC28B-204ENST00000469003 LATS2Q9NRM7 1088 aa16.13■□□□□ 0.17
CCDC28B-204ENST00000469003 KCND1Q9NSA2 647 aa16.13■□□□□ 0.17
CCDC28B-204ENST00000469003 PACSIN2Q9UNF0 486 aaPredicted RBP16.13■□□□□ 0.17
CCDC28B-204ENST00000469003 BTRCQ9Y297 605 aa16.13■□□□□ 0.17
CCDC28B-204ENST00000469003 PIPSLA2A3N6 862 aa16.12■□□□□ 0.17
CCDC28B-204ENST00000469003 CDC14CA4D256 554 aa16.12■□□□□ 0.17
CCDC28B-204ENST00000469003 DDX3YO15523 660 aaKnown RBP16.12■□□□□ 0.17
CCDC28B-204ENST00000469003 PSMD3O43242 534 aa16.12■□□□□ 0.17
CCDC28B-204ENST00000469003 CPNE3O75131 537 aaKnown RBP16.12■□□□□ 0.17
CCDC28B-204ENST00000469003 TPH1P17752 444 aa16.12■□□□□ 0.17
CCDC28B-204ENST00000469003 CD151P48509 253 aa16.12■□□□□ 0.17
CCDC28B-204ENST00000469003 KIF5AQ12840 1032 aa16.12■□□□□ 0.17
CCDC28B-204ENST00000469003 GPR19Q15760 415 aa16.12■□□□□ 0.17
CCDC28B-204ENST00000469003 TAS2R42Q7RTR8 314 aa16.12■□□□□ 0.17
CCDC28B-204ENST00000469003 TXLNBQ8N3L3 684 aa16.12■□□□□ 0.17
CCDC28B-204ENST00000469003 SLC35B2Q8TB61 432 aa16.12■□□□□ 0.17
CCDC28B-204ENST00000469003 STYXQ8WUJ0 223 aa16.12■□□□□ 0.17
CCDC28B-204ENST00000469003 SEC14L1Q92503 715 aa16.12■□□□□ 0.17
CCDC28B-204ENST00000469003 CDKN2AIPNLQ96HQ2 116 aa16.12■□□□□ 0.17
CCDC28B-204ENST00000469003 PPM1MQ96MI6 270 aa16.12■□□□□ 0.17
CCDC28B-204ENST00000469003 FERD3LQ96RJ6 166 aa16.12■□□□□ 0.17
CCDC28B-204ENST00000469003 GPR87Q9BY21 358 aa16.12■□□□□ 0.17
CCDC28B-204ENST00000469003 SRMSQ9H3Y6 488 aa16.12■□□□□ 0.17
CCDC28B-204ENST00000469003 ACTL8Q9H568 366 aa16.12■□□□□ 0.17
CCDC28B-204ENST00000469003 AKIRIN1Q9H9L7 192 aaPredicted RBP16.12■□□□□ 0.17
CCDC28B-204ENST00000469003 C1GALT1Q9NS00 363 aa16.12■□□□□ 0.17
CCDC28B-204ENST00000469003 SOHLH2Q9NX45 425 aa16.12■□□□□ 0.17
CCDC28B-204ENST00000469003 POMT2Q9UKY4 750 aa16.12■□□□□ 0.17
CCDC28B-204ENST00000469003 R3HDM2Q9Y2K5 976 aaKnown RBP16.12■□□□□ 0.17
CCDC28B-204ENST00000469003 MKRN2OSH3BPM6 223 aa16.11■□□□□ 0.17
CCDC28B-204ENST00000469003 IFRD1O00458 451 aaPredicted RBP16.11■□□□□ 0.17
CCDC28B-204ENST00000469003 SCRG1O75711 98 aa16.11■□□□□ 0.17
CCDC28B-204ENST00000469003 AP2A1O95782 977 aa16.11■□□□□ 0.17
CCDC28B-204ENST00000469003 FTCDO95954 541 aa16.11■□□□□ 0.17
CCDC28B-204ENST00000469003 GSTM1P09488 218 aa16.11■□□□□ 0.17
CCDC28B-204ENST00000469003 CDH3P22223 829 aa16.11■□□□□ 0.17
CCDC28B-204ENST00000469003 PMS2P54278 862 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms