RNA–Protein interactions for RNA: ENST00000464541.5

PTCD3-205, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5

Gene PTCD3, Length 890 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-205ENST00000464541 CSPG5O95196 566 aa5.49□□□□□ -1.53
PTCD3-205ENST00000464541 GJA1P17302 382 aa5.49□□□□□ -1.53
PTCD3-205ENST00000464541 PSMC4P43686 418 aa5.49□□□□□ -1.53
PTCD3-205ENST00000464541 THOP1P52888 689 aa5.49□□□□□ -1.53
PTCD3-205ENST00000464541 CDK3Q00526 305 aa5.49□□□□□ -1.53
PTCD3-205ENST00000464541 GRAPQ13588 217 aa5.49□□□□□ -1.53
PTCD3-205ENST00000464541 TRPT1Q86TN4 253 aaKnown RBP5.49□□□□□ -1.53
PTCD3-205ENST00000464541 GUF1Q8N442 669 aaKnown RBP5.49□□□□□ -1.53
PTCD3-205ENST00000464541 MINDY1Q8N5J2 469 aa5.49□□□□□ -1.53
PTCD3-205ENST00000464541 FAM76AQ8TAV0 307 aa5.49□□□□□ -1.53
PTCD3-205ENST00000464541 WDR20Q8TBZ3 569 aa5.49□□□□□ -1.53
PTCD3-205ENST00000464541 DAZLQ92904 295 aaKnown RBP5.49□□□□□ -1.53
PTCD3-205ENST00000464541 SGK494Q96LW2 274 aa5.49□□□□□ -1.53
PTCD3-205ENST00000464541 F2RL3Q96RI0 385 aa5.49□□□□□ -1.53
PTCD3-205ENST00000464541 BICC1Q9H694 974 aaKnown RBP5.49□□□□□ -1.53
PTCD3-205ENST00000464541 ADPRHL2Q9NX46 363 aa5.49□□□□□ -1.53
PTCD3-205ENST00000464541 GREB1LQ9C091 1923 aaPredicted RBP5.48□□□□□ -1.53
PTCD3-205ENST00000464541 GPR75-ASB3A0A0A6YYF3 556 aa5.48□□□□□ -1.53
PTCD3-205ENST00000464541 ADAMDEC1O15204 470 aa5.48□□□□□ -1.53
PTCD3-205ENST00000464541 SYNCRIPO60506 623 aaKnown RBP5.48□□□□□ -1.53
PTCD3-205ENST00000464541 SOCS5O75159 536 aa5.48□□□□□ -1.53
PTCD3-205ENST00000464541 TSHBP01222 138 aa5.48□□□□□ -1.53
PTCD3-205ENST00000464541 LIFP15018 202 aa5.48□□□□□ -1.53
PTCD3-205ENST00000464541 CBLP22681 906 aa5.48□□□□□ -1.53
PTCD3-205ENST00000464541 HOXC8P31273 242 aa5.48□□□□□ -1.53
PTCD3-205ENST00000464541 GRTP1Q5TC63 336 aa5.48□□□□□ -1.53
PTCD3-205ENST00000464541 DGLUCYQ7Z3D6 616 aa5.48□□□□□ -1.53
PTCD3-205ENST00000464541 CEP57Q86XR8 500 aa5.48□□□□□ -1.53
PTCD3-205ENST00000464541 CPSF7Q8N684 471 aaKnown RBP5.48□□□□□ -1.53
PTCD3-205ENST00000464541 ZNF622Q969S3 477 aaKnown RBP eCLIP5.48□□□□□ -1.533e-8■■□□□ 14.5
PTCD3-205ENST00000464541 ZNF501Q96CX3 271 aaPredicted RBP5.48□□□□□ -1.53
PTCD3-205ENST00000464541 SLC47A1Q96FL8 570 aa5.48□□□□□ -1.53
PTCD3-205ENST00000464541 ABHD6Q9BV23 337 aa5.48□□□□□ -1.53
PTCD3-205ENST00000464541 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP5.48□□□□□ -1.53
PTCD3-205ENST00000464541 ECHDC1Q9NTX5 307 aa5.48□□□□□ -1.53
PTCD3-205ENST00000464541 SPIN1Q9Y657 262 aaPredicted RBP5.48□□□□□ -1.53
PTCD3-205ENST00000464541 CLIC2O15247 247 aa5.47□□□□□ -1.53
PTCD3-205ENST00000464541 EDIL3O43854 480 aa5.47□□□□□ -1.53
PTCD3-205ENST00000464541 TSPAN1O60635 241 aa5.47□□□□□ -1.53
PTCD3-205ENST00000464541 MED24O75448 989 aa5.47□□□□□ -1.53
PTCD3-205ENST00000464541 BEST1O76090 585 aa5.47□□□□□ -1.53
PTCD3-205ENST00000464541 PNRC1Q12796 327 aaPredicted RBP5.47□□□□□ -1.53
PTCD3-205ENST00000464541 RBMS3Q6XE24 437 aaKnown RBP5.47□□□□□ -1.53
PTCD3-205ENST00000464541 DNAAF5Q86Y56 855 aa5.47□□□□□ -1.53
PTCD3-205ENST00000464541 KLHDC8BQ8IXV7 354 aa5.47□□□□□ -1.53
PTCD3-205ENST00000464541 AFAP1Q8N556 730 aa5.47□□□□□ -1.53
PTCD3-205ENST00000464541 FCAMRQ8WWV6 532 aa5.47□□□□□ -1.53
PTCD3-205ENST00000464541 CDRT15Q96T59 188 aa5.47□□□□□ -1.53
PTCD3-205ENST00000464541 C16orf70Q9BSU1 422 aa5.47□□□□□ -1.53
PTCD3-205ENST00000464541 SLC7A7Q9UM01 511 aa5.47□□□□□ -1.53
PTCD3-205ENST00000464541 PCDHGB4Q9UN71 923 aa5.47□□□□□ -1.53
PTCD3-205ENST00000464541 A6NL46 340 aa5.46□□□□□ -1.54
PTCD3-205ENST00000464541 PRSS47A8MTI9 375 aa5.46□□□□□ -1.54
PTCD3-205ENST00000464541 HMGB1P1B2RPK0 211 aaPredicted RBP5.46□□□□□ -1.54
PTCD3-205ENST00000464541 CIDEAO60543 219 aa5.46□□□□□ -1.54
PTCD3-205ENST00000464541 PGM3O95394 542 aa5.46□□□□□ -1.54
PTCD3-205ENST00000464541 AMBPP02760 352 aa5.46□□□□□ -1.54
PTCD3-205ENST00000464541 CFC1BP0CG36 223 aa5.46□□□□□ -1.54
PTCD3-205ENST00000464541 CFC1P0CG37 223 aa5.46□□□□□ -1.54
PTCD3-205ENST00000464541 ERVK-10P10266 1014 aa5.46□□□□□ -1.54
PTCD3-205ENST00000464541 SLC6A6P31641 620 aa5.46□□□□□ -1.54
PTCD3-205ENST00000464541 ACTN2P35609 894 aa5.46□□□□□ -1.54
PTCD3-205ENST00000464541 LMAN1P49257 510 aa5.46□□□□□ -1.54
PTCD3-205ENST00000464541 HSD17B4P51659 736 aa5.46□□□□□ -1.54
PTCD3-205ENST00000464541 PRKAA1Q13131 559 aa5.46□□□□□ -1.54
PTCD3-205ENST00000464541 ADAM5Q6NVV9 412 aa5.46□□□□□ -1.54
PTCD3-205ENST00000464541 ZNF449Q6P9G9 518 aa5.46□□□□□ -1.54
PTCD3-205ENST00000464541 CRYBG2Q8N1P7 616 aa5.46□□□□□ -1.54
PTCD3-205ENST00000464541 APPL2Q8NEU8 664 aa5.46□□□□□ -1.54
PTCD3-205ENST00000464541 TRIM58Q8NG06 486 aa5.46□□□□□ -1.54
PTCD3-205ENST00000464541 TAS1R2Q8TE23 839 aa5.46□□□□□ -1.54
PTCD3-205ENST00000464541 UBE2Q2Q8WVN8 375 aa5.46□□□□□ -1.54
PTCD3-205ENST00000464541 LPGAT1Q92604 370 aa5.46□□□□□ -1.54
PTCD3-205ENST00000464541 LGALS12Q96DT0 336 aa5.46□□□□□ -1.54
PTCD3-205ENST00000464541 NUDT16L1Q9BRJ7 211 aaKnown RBP5.46□□□□□ -1.54
PTCD3-205ENST00000464541 RBM4Q9BWF3 364 aaKnown RBP5.46□□□□□ -1.54
PTCD3-205ENST00000464541 PDE7BQ9NP56 450 aa5.46□□□□□ -1.54
PTCD3-205ENST00000464541 C2orf42Q9NWW7 574 aa5.46□□□□□ -1.54
PTCD3-205ENST00000464541 CHORDC1Q9UHD1 332 aaPredicted RBP5.46□□□□□ -1.54
PTCD3-205ENST00000464541 WDR81Q562E7 1941 aa5.45□□□□□ -1.54
PTCD3-205ENST00000464541 HEPACAM2A8MVW5 462 aa5.45□□□□□ -1.54
PTCD3-205ENST00000464541 EPHA2P29317 976 aa5.45□□□□□ -1.54
PTCD3-205ENST00000464541 NNMTP40261 264 aa5.45□□□□□ -1.54
PTCD3-205ENST00000464541 CRIP2P52943 208 aaPredicted RBP5.45□□□□□ -1.54
PTCD3-205ENST00000464541 ZNF876PQ49A33 203 aa5.45□□□□□ -1.54
PTCD3-205ENST00000464541 IGSF11Q5DX21 431 aa5.45□□□□□ -1.54
PTCD3-205ENST00000464541 WDR78Q5VTH9 848 aa5.45□□□□□ -1.54
PTCD3-205ENST00000464541 ADIPOR2Q86V24 386 aa5.45□□□□□ -1.54
PTCD3-205ENST00000464541 LINC00346Q8IVM7 164 aa5.45□□□□□ -1.54
PTCD3-205ENST00000464541 SYT2Q8N9I0 419 aaPredicted RBP5.45□□□□□ -1.54
PTCD3-205ENST00000464541 EXD1Q8NHP7 514 aa5.45□□□□□ -1.54
PTCD3-205ENST00000464541 BTBD10Q9BSF8 475 aa5.45□□□□□ -1.54
PTCD3-205ENST00000464541 LMF2Q9BU23 707 aaKnown RBP5.45□□□□□ -1.54
PTCD3-205ENST00000464541 ACKR4Q9NPB9 350 aa5.45□□□□□ -1.54
PTCD3-205ENST00000464541 MDFICQ9P1T7 246 aa5.45□□□□□ -1.54
PTCD3-205ENST00000464541 RHCGQ9UBD6 479 aa5.45□□□□□ -1.54
PTCD3-205ENST00000464541 MORF4L1Q9UBU8 362 aa5.45□□□□□ -1.54
PTCD3-205ENST00000464541 C2CD2Q9Y426 696 aa5.45□□□□□ -1.54
PTCD3-205ENST00000464541 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP5.45□□□□□ -1.541e-10■□□□□ 10.5
PTCD3-205ENST00000464541 A0A1W2PRB8 838 aa5.44□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms