RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-208	ENST00000459947	MN1	Q10571	1320 aa	Predicted RBP	10.46	□□□□□ -0.74
UBR4-208	ENST00000459947	PABPN1L	A6NDY0	278 aa	Known RBP	10.46	□□□□□ -0.74
UBR4-208	ENST00000459947	S1PR4	O95977	384 aa		10.46	□□□□□ -0.74
UBR4-208	ENST00000459947	ANKRD34C	P0C6C1	535 aa		10.46	□□□□□ -0.74
UBR4-208	ENST00000459947	AOAH	P28039	575 aa		10.46	□□□□□ -0.74
UBR4-208	ENST00000459947	SLC19A1	P41440	591 aa		10.46	□□□□□ -0.74
UBR4-208	ENST00000459947	ISX	Q2M1V0	245 aa		10.46	□□□□□ -0.74
UBR4-208	ENST00000459947	ZNF658B	Q4V348	819 aa	Predicted RBP	10.46	□□□□□ -0.74
UBR4-208	ENST00000459947	DCUN1D3	Q8IWE4	304 aa		10.46	□□□□□ -0.74
UBR4-208	ENST00000459947	ZBED8	Q8IZ13	594 aa		10.46	□□□□□ -0.74
UBR4-208	ENST00000459947	ZBTB2	Q8N680	514 aa		10.46	□□□□□ -0.74
UBR4-208	ENST00000459947	UBXN4	Q92575	508 aa		10.46	□□□□□ -0.74
UBR4-208	ENST00000459947	VPS39	Q96JC1	886 aa		10.46	□□□□□ -0.74
UBR4-208	ENST00000459947	FCRL3	Q96P31	734 aa	Predicted RBP	10.46	□□□□□ -0.74
UBR4-208	ENST00000459947	SLC40A1	Q9NP59	571 aa		10.46	□□□□□ -0.74
UBR4-208	ENST00000459947	IARS2	Q9NSE4	1012 aa	Known RBP	10.46	□□□□□ -0.74
UBR4-208	ENST00000459947	TAS2R13	Q9NYV9	303 aa		10.46	□□□□□ -0.74
UBR4-208	ENST00000459947	TRIO	O75962	3097 aa		10.46	□□□□□ -0.74
UBR4-208	ENST00000459947	BHMG1	C9JSJ3	638 aa	Predicted RBP	10.45	□□□□□ -0.74
UBR4-208	ENST00000459947	SLCO2B1	O94956	709 aa		10.45	□□□□□ -0.74
UBR4-208	ENST00000459947	CDKN1C	P49918	316 aa	Predicted RBP	10.45	□□□□□ -0.74
UBR4-208	ENST00000459947	GUCY2D	Q02846	1103 aa		10.45	□□□□□ -0.74
UBR4-208	ENST00000459947	RTP5	Q14D33	572 aa		10.45	□□□□□ -0.74
UBR4-208	ENST00000459947	PLCL1	Q15111	1095 aa		10.45	□□□□□ -0.74
UBR4-208	ENST00000459947	TAOK1	Q7L7X3	1001 aa		10.45	□□□□□ -0.74
UBR4-208	ENST00000459947	AARSD1	Q9BTE6	412 aa	Known RBP	10.45	□□□□□ -0.74
UBR4-208	ENST00000459947	SYTL2	Q9HCH5	934 aa		10.45	□□□□□ -0.74
UBR4-208	ENST00000459947	IMP3	Q9NV31	184 aa	Known RBP	10.45	□□□□□ -0.74
UBR4-208	ENST00000459947	TRMT6	Q9UJA5	497 aa	Known RBP	10.45	□□□□□ -0.74
UBR4-208	ENST00000459947	PCDHGA8	Q9Y5G5	932 aa		10.45	□□□□□ -0.74
UBR4-208	ENST00000459947	GPC4	O75487	556 aa		10.45	□□□□□ -0.74
UBR4-208	ENST00000459947	CD82	P27701	267 aa		10.45	□□□□□ -0.74
UBR4-208	ENST00000459947	BPHL	Q86WA6	291 aa	Predicted RBP	10.45	□□□□□ -0.74
UBR4-208	ENST00000459947	TFG	Q92734	400 aa	Predicted RBP	10.45	□□□□□ -0.74
UBR4-208	ENST00000459947	FERD3L	Q96RJ6	166 aa		10.45	□□□□□ -0.74
UBR4-208	ENST00000459947	LRRC1	Q9BTT6	524 aa		10.45	□□□□□ -0.74
UBR4-208	ENST00000459947	POPDC3	Q9HBV1	291 aa		10.45	□□□□□ -0.74
UBR4-208	ENST00000459947	ZNF624	Q9P2J8	865 aa	Predicted RBP	10.45	□□□□□ -0.74
UBR4-208	ENST00000459947	PDP2	Q9P2J9	529 aa		10.45	□□□□□ -0.74
UBR4-208	ENST00000459947	CAT	P04040	527 aa	Known RBP	10.45	□□□□□ -0.74
UBR4-208	ENST00000459947	LSS	P48449	732 aa		10.45	□□□□□ -0.74
UBR4-208	ENST00000459947	LIMK2	P53671	638 aa		10.45	□□□□□ -0.74
UBR4-208	ENST00000459947	SP140	Q13342	867 aa		10.45	□□□□□ -0.74
UBR4-208	ENST00000459947	SEMA3A	Q14563	771 aa		10.45	□□□□□ -0.74
UBR4-208	ENST00000459947	HSP90AA5P	Q58FG0	334 aa		10.45	□□□□□ -0.74
UBR4-208	ENST00000459947	CES3	Q6UWW8	571 aa		10.45	□□□□□ -0.74
UBR4-208	ENST00000459947	FAM83H	Q6ZRV2	1179 aa	Predicted RBP	10.45	□□□□□ -0.74
UBR4-208	ENST00000459947	PRSS42	Q7Z5A4	293 aa		10.45	□□□□□ -0.74
UBR4-208	ENST00000459947	CCDC97	Q96F63	343 aa	Predicted RBP	10.45	□□□□□ -0.74
UBR4-208	ENST00000459947	INSM2	Q96T92	566 aa	Predicted RBP	10.45	□□□□□ -0.74
UBR4-208	ENST00000459947	CCDC189	A1A4V9	331 aa		10.44	□□□□□ -0.74
UBR4-208	ENST00000459947	ESPN	B1AK53	854 aa		10.44	□□□□□ -0.74
UBR4-208	ENST00000459947	PPM1D	O15297	605 aa		10.44	□□□□□ -0.74
UBR4-208	ENST00000459947	GPR39	O43194	453 aa		10.44	□□□□□ -0.74
UBR4-208	ENST00000459947	HYAL3	O43820	417 aa	Predicted RBP	10.44	□□□□□ -0.74
UBR4-208	ENST00000459947	UBXN7	O94888	489 aa		10.44	□□□□□ -0.74
UBR4-208	ENST00000459947	TUBB	P07437	444 aa		10.44	□□□□□ -0.74
UBR4-208	ENST00000459947	CHRM3	P20309	590 aa		10.44	□□□□□ -0.74
UBR4-208	ENST00000459947	ALDH4A1	P30038	563 aa		10.44	□□□□□ -0.74
UBR4-208	ENST00000459947	FMO4	P31512	558 aa		10.44	□□□□□ -0.74
UBR4-208	ENST00000459947	SLC1A2	P43004	574 aa		10.44	□□□□□ -0.74
UBR4-208	ENST00000459947	MAGEA4	P43358	317 aa		10.44	□□□□□ -0.74
UBR4-208	ENST00000459947	CAPZB	P47756	277 aa		10.44	□□□□□ -0.74
UBR4-208	ENST00000459947	CARS	P49589	748 aa	Known RBP	10.44	□□□□□ -0.74
UBR4-208	ENST00000459947	FBXO15	Q8NCQ5	510 aa	Predicted RBP	10.44	□□□□□ -0.74
UBR4-208	ENST00000459947	SLC22A18	Q96BI1	424 aa		10.44	□□□□□ -0.74
UBR4-208	ENST00000459947	FMO2	Q99518	471 aa		10.44	□□□□□ -0.74
UBR4-208	ENST00000459947	CMKLR1	Q99788	373 aa		10.44	□□□□□ -0.74
UBR4-208	ENST00000459947	CPNE1	Q99829	537 aa		10.44	□□□□□ -0.74
UBR4-208	ENST00000459947	ZPBP	Q9BS86	351 aa		10.44	□□□□□ -0.74
UBR4-208	ENST00000459947	SCNM1	Q9BWG6	230 aa		10.44	□□□□□ -0.74
UBR4-208	ENST00000459947	PPAN	Q9NQ55	473 aa	Known RBP	10.44	□□□□□ -0.74
UBR4-208	ENST00000459947	PRSS21	Q9Y6M0	314 aa		10.44	□□□□□ -0.74
UBR4-208	ENST00000459947	SLC16A5	O15375	505 aa		10.44	□□□□□ -0.74
UBR4-208	ENST00000459947	RBMS1	P29558	406 aa	Known RBP	10.44	□□□□□ -0.74
UBR4-208	ENST00000459947	CLDN19	Q8N6F1	224 aa		10.44	□□□□□ -0.74
UBR4-208	ENST00000459947		Q8N9G6	341 aa	Predicted RBP	10.44	□□□□□ -0.74
UBR4-208	ENST00000459947	AGBL5	Q8NDL9	886 aa		10.44	□□□□□ -0.74
UBR4-208	ENST00000459947	RAD51AP1	Q96B01	352 aa		10.44	□□□□□ -0.74
UBR4-208	ENST00000459947	TEFM	Q96QE5	360 aa	Known RBP	10.44	□□□□□ -0.74
UBR4-208	ENST00000459947	POLR1B	Q9H9Y6	1135 aa		10.44	□□□□□ -0.74
UBR4-208	ENST00000459947	MOCS1	Q9NZB8	636 aa		10.44	□□□□□ -0.74
UBR4-208	ENST00000459947	WASF3	Q9UPY6	502 aa		10.44	□□□□□ -0.74
UBR4-208	ENST00000459947	DHRS7	Q9Y394	339 aa		10.44	□□□□□ -0.74
UBR4-208	ENST00000459947	PCYT1B	Q9Y5K3	369 aa	Predicted RBP	10.44	□□□□□ -0.74
UBR4-208	ENST00000459947	ARID1B	Q8NFD5	2236 aa	Predicted RBP	10.44	□□□□□ -0.74
UBR4-208	ENST00000459947	B4GAT1	O43505	415 aa		10.44	□□□□□ -0.74
UBR4-208	ENST00000459947	DXO	O77932	396 aa	Known RBP	10.44	□□□□□ -0.74
UBR4-208	ENST00000459947	C9	P02748	559 aa		10.44	□□□□□ -0.74
UBR4-208	ENST00000459947	BRAF	P15056	766 aa		10.44	□□□□□ -0.74
UBR4-208	ENST00000459947	CA5A	P35218	305 aa		10.44	□□□□□ -0.74
UBR4-208	ENST00000459947	RAB15	P59190	212 aa		10.44	□□□□□ -0.74
UBR4-208	ENST00000459947	ZFP36L1	Q07352	338 aa	Known RBP	10.44	□□□□□ -0.74
UBR4-208	ENST00000459947	TCEA2	Q15560	299 aa		10.44	□□□□□ -0.74
UBR4-208	ENST00000459947	SEPT7	Q16181	437 aa	Known RBP	10.44	□□□□□ -0.74
UBR4-208	ENST00000459947	TMEM164	Q5U3C3	297 aa		10.44	□□□□□ -0.74
UBR4-208	ENST00000459947	FBXO25	Q8TCJ0	367 aa		10.44	□□□□□ -0.74
UBR4-208	ENST00000459947	ANKRD7	Q92527	254 aa		10.44	□□□□□ -0.74
UBR4-208	ENST00000459947	ZNF578	Q96N58	590 aa	Predicted RBP	10.44	□□□□□ -0.74
UBR4-208	ENST00000459947	SLC24A2	Q9UI40	661 aa		10.44	□□□□□ -0.74

Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms