RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 VANGL1Q8TAA9 524 aaPredicted RBP4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 TBC1D16Q8TBP0 767 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 KCNG4Q8TDN1 519 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 ZNF473Q8WTR7 871 aaKnown RBP4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 SETD7Q8WTS6 366 aaKnown RBP4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 STYXQ8WUJ0 223 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 PRCCQ92733 491 aaPredicted RBP4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 UTP4Q969X6 686 aaKnown RBP4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 OMA1Q96E52 524 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 FAM46AQ96IP4 442 aaKnown RBP4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 ZNF514Q96K75 400 aaPredicted RBP4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 B3GALT6Q96L58 329 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 CSPG4P5Q96PW8 444 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 JMJD8Q96S16 334 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 NEU1Q99519 415 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 SLC22A4Q9H015 551 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 RACGAP1Q9H0H5 632 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 OR51V1Q9H2C8 321 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 OPA3Q9H6K4 179 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 KAT14Q9H8E8 782 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 IL26Q9NPH9 171 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 TUBG2Q9NRH3 451 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 PLCXD1Q9NUJ7 323 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 UFSP2Q9NUQ7 469 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 CMTM6Q9NX76 183 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 COL20A1Q9P218 1284 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 AGO1Q9UL18 857 aaKnown RBP4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 MAN2B2Q9Y2E5 1009 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 SIK3Q9Y2K2 1263 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 KLHL20Q9Y2M5 609 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 NR2E1Q9Y466 385 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 PCDHGA5Q9Y5G8 931 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 SCN9AQ15858 1988 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 XDHP47989 1333 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 BECN2A8MW95 431 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 GTPBP1O00178 669 aaKnown RBP4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 CHMP2AO43633 222 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 MITFO75030 526 aaPredicted RBP4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 BCAS1O75363 584 aaPredicted RBP4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 RSL1D1O76021 490 aaKnown RBP4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 CD63P08962 238 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 CD3GP09693 182 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 OR4E1P0C645 316 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 ACADMP11310 421 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 SRCP12931 536 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 JUPP14923 745 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 ELNP15502 786 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 CYP2A7P20853 494 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 ADRA1DP25100 572 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 SERPINB5P36952 375 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 GP5P40197 560 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 CD79BP40259 229 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 GPR4P46093 362 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 LEPRP48357 1165 aaKnown RBP4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 CCT3P49368 545 aaKnown RBP4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 HOXA1P49639 335 aaPredicted RBP4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 ZNF81P51508 661 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 ARL4CP56559 192 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 RPS16P62249 146 aaKnown RBP4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 CHRNDQ07001 517 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 MADCAM1Q13477 382 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 ZNF268Q14587 947 aaPredicted RBP4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 PUM1Q14671 1186 aaKnown RBP eCLIP4.74□□□□□ -1.652e-6■□□□□ 8.9
CCDC88A-209ENST00000456975 SEC23BQ15437 767 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 TMEM44Q2T9K0 475 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 GAB4Q2WGN9 574 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 KHDC1Q4VXA5 237 aaKnown RBP4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 ZC2HC1CQ53FD0 456 aaPredicted RBP4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 ARHGAP15Q53QZ3 475 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 YIF1BQ5BJH7 314 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 MPP7Q5T2T1 576 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 ARHGAP17Q68EM7 881 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 LYPD4Q6UWN0 246 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 DCXRQ7Z4W1 244 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 IFT20Q8IY31 132 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 ZNF679Q8IYX0 411 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 VGLL2Q8N8G2 317 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 UBA3Q8TBC4 463 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 ACTRT2Q8TDY3 377 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 THRSPQ92748 146 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 P3H4Q92791 437 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 DCPSQ96C86 337 aaKnown RBP4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 SCARF2Q96GP6 870 aaPredicted RBP4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 ZBED3Q96IU2 234 aaPredicted RBP4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 CLPTM1LQ96KA5 538 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 INPP4AQ96PE3 977 aaPredicted RBP4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 CCNL2Q96S94 520 aaPredicted RBP4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 C12orf57Q99622 126 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 CITED2Q99967 270 aaPredicted RBP4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 KCNS3Q9BQ31 491 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 ACBD6Q9BR61 282 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 ZSCAN5AQ9BUG6 496 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 THUMPD3Q9BV44 507 aaKnown RBP4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 TEX12Q9BXU0 123 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 OPN3Q9H1Y3 402 aaPredicted RBP4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 SLC6A15Q9H2J7 730 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 MMP27Q9H306 513 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 ARL8BQ9NVJ2 186 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 ELOVL2Q9NXB9 296 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 COPG2Q9UBF2 871 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms