RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 AP1S2P56377 157 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 ELF3P78545 371 aaPredicted RBP7.28□□□□□ -1.24
SYNE1-213ENST00000448038 NDUFA9Q16795 377 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 NCEH1Q6PIU2 408 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 RTL10Q7L3V2 364 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 TRIM74Q86UV6 250 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 FAM46DQ8NEK8 389 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 PTCD3Q96EY7 689 aaKnown RBP7.28□□□□□ -1.24
SYNE1-213ENST00000448038 NUSAP1Q9BXS6 441 aaKnown RBP7.28□□□□□ -1.24
SYNE1-213ENST00000448038 ZNF334Q9HCZ1 680 aaPredicted RBP7.28□□□□□ -1.24
SYNE1-213ENST00000448038 WBP1LQ9NX94 342 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 RPS6KA6Q9UK32 745 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 PRPF19Q9UMS4 504 aaKnown RBP7.28□□□□□ -1.24
SYNE1-213ENST00000448038 PRKAB1Q9Y478 270 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 AP4S1Q9Y587 144 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 DYTNA2CJ06 578 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 SNTNA6NMZ2 147 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 PSMG1O95456 288 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 ALPPL2P10696 532 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 PPIBP23284 216 aaKnown RBP7.28□□□□□ -1.24
SYNE1-213ENST00000448038 SLC6A4P31645 630 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 HSD17B2P37059 387 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 MAPK12P53778 367 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 RPS7P62081 194 aaKnown RBP7.28□□□□□ -1.24
SYNE1-213ENST00000448038 TMEM115Q12893 351 aaPredicted RBP7.28□□□□□ -1.24
SYNE1-213ENST00000448038 C9orf64Q5T6V5 341 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 ZDHHC13Q8IUH4 622 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 SEC14L1Q92503 715 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 PEX13Q92968 403 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 TADA1Q96BN2 335 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 CDK15Q96Q40 435 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 MCMBPQ9BTE3 642 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 YIPF3Q9GZM5 350 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 REEP1Q9H902 201 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 MRPS30Q9NP92 439 aaKnown RBP7.28□□□□□ -1.24
SYNE1-213ENST00000448038 GDE1Q9NZC3 331 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 LZTS1Q9Y250 596 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 LCHNA4D1U4 455 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 KIAA0355O15063 1070 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 KMOO15229 486 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 DLX3O60479 287 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 ALAS2P22557 587 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 PTPN5P54829 565 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 SLC18A2Q05940 514 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 BNIP2Q12982 314 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 TIFABQ6ZNK6 161 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 ARMCX6Q7L4S7 300 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 CYP2U1Q7Z449 544 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 TMCO5AQ8N6Q1 288 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 TFGQ92734 400 aaPredicted RBP7.28□□□□□ -1.24
SYNE1-213ENST00000448038 PPM1MQ96MI6 270 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 MTERF1Q99551 399 aaKnown RBP7.28□□□□□ -1.24
SYNE1-213ENST00000448038 C3orf14Q9HBI5 128 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 SIRPGQ9P1W8 387 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 KCNK6Q9Y257 313 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 ACTL7AQ9Y615 435 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 PIAS3Q9Y6X2 628 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 TCRBV21S2A2A0A5A6 115 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 VGLL3A8MV65 326 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 C9JVG2 144 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 SHOX2O60902 331 aaPredicted RBP7.28□□□□□ -1.24
SYNE1-213ENST00000448038 SERPINI2O75830 405 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 NDUFS1P28331 727 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 CAPZA2P47755 286 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 VPS26BQ4G0F5 336 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 ADHFE1Q8IWW8 467 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 ULK2Q8IYT8 1036 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 STX19Q8N4C7 294 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 CAMKK1Q8N5S9 505 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 DEFB119Q8N690 84 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 KCNJ9Q92806 393 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 FGF13Q92913 245 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 HIC2Q96JB3 615 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 HOPXQ9BPY8 73 aaPredicted RBP7.28□□□□□ -1.24
SYNE1-213ENST00000448038 TMEM79Q9BSE2 394 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 EBPLQ9BY08 206 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 PRRG3Q9BZD7 231 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 DERL2Q9GZP9 239 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 EXOSC4Q9NPD3 245 aaKnown RBP7.28□□□□□ -1.24
SYNE1-213ENST00000448038 C1orf109Q9NX04 203 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 EGFL7Q9UHF1 273 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 CD207Q9UJ71 328 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 CDV3Q9UKY7 258 aaKnown RBP7.28□□□□□ -1.24
SYNE1-213ENST00000448038 B4DGG1 531 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 GRID2O43424 1007 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 SRCP12931 536 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 FOSL2P15408 326 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 GTF2E2P29084 291 aaKnown RBP7.28□□□□□ -1.24
SYNE1-213ENST00000448038 LRRC74BQ6ZQY2 392 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 PRR23BQ6ZRT6 265 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 HTR3DQ70Z44 454 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 LIX1Q8N485 282 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 ZCCHC10Q8TBK6 192 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 RTP4Q96DX8 246 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 C9orf16Q9BUW7 83 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 SPATA5L1Q9BVQ7 753 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 SLC32A1Q9H598 525 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 PAK6Q9NQU5 681 aaPredicted RBP7.28□□□□□ -1.24
SYNE1-213ENST00000448038 DLGAP2Q9P1A6 1054 aa7.28□□□□□ -1.24
SYNE1-213ENST00000448038 OR1I1O60431 355 aa7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms