RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 TTPAP49638 278 aa14.82□□□□□ -0.04
LIMS3-201ENST00000437679 SEPHS1P49903 392 aa14.82□□□□□ -0.04
LIMS3-201ENST00000437679 CXADRP78310 365 aa14.82□□□□□ -0.04
LIMS3-201ENST00000437679 PLOD1Q02809 727 aaPredicted RBP14.82□□□□□ -0.04
LIMS3-201ENST00000437679 SEMA3AQ14563 771 aa14.82□□□□□ -0.04
LIMS3-201ENST00000437679 PPP1R7Q15435 360 aa14.82□□□□□ -0.04
LIMS3-201ENST00000437679 ZNF658BQ4V348 819 aaPredicted RBP14.82□□□□□ -0.04
LIMS3-201ENST00000437679 SYTL3Q4VX76 610 aa14.82□□□□□ -0.04
LIMS3-201ENST00000437679 CACHD1Q5VU97 1274 aa14.82□□□□□ -0.04
LIMS3-201ENST00000437679 ANKRD22Q5VYY1 191 aa14.82□□□□□ -0.04
LIMS3-201ENST00000437679 ARMC3Q5W041 872 aa14.82□□□□□ -0.04
LIMS3-201ENST00000437679 ARMC6Q6NXE6 501 aa14.82□□□□□ -0.04
LIMS3-201ENST00000437679 CASC4Q6P4E1 433 aa14.82□□□□□ -0.04
LIMS3-201ENST00000437679 CEACAM20Q6UY09 585 aa14.82□□□□□ -0.04
LIMS3-201ENST00000437679 FAM92BQ6ZTR7 304 aa14.82□□□□□ -0.04
LIMS3-201ENST00000437679 OOSP2Q86WS3 158 aa14.82□□□□□ -0.04
LIMS3-201ENST00000437679 ZFAND4Q86XD8 727 aa14.82□□□□□ -0.04
LIMS3-201ENST00000437679 OTUD6BQ8N6M0 293 aa14.82□□□□□ -0.04
LIMS3-201ENST00000437679 BMPERQ8N8U9 685 aa14.82□□□□□ -0.04
LIMS3-201ENST00000437679 MCUQ8NE86 351 aa14.82□□□□□ -0.04
LIMS3-201ENST00000437679 CPT1BQ92523 772 aa14.82□□□□□ -0.04
LIMS3-201ENST00000437679 FCRL3Q96P31 734 aaPredicted RBP14.82□□□□□ -0.04
LIMS3-201ENST00000437679 TEFMQ96QE5 360 aaKnown RBP14.82□□□□□ -0.04
LIMS3-201ENST00000437679 NAPGQ99747 312 aaPredicted RBP14.82□□□□□ -0.04
LIMS3-201ENST00000437679 XAB2Q9HCS7 855 aaKnown RBP14.82□□□□□ -0.04
LIMS3-201ENST00000437679 FBXO8Q9NRD0 319 aa14.82□□□□□ -0.04
LIMS3-201ENST00000437679 SLC24A2Q9UI40 661 aa14.82□□□□□ -0.04
LIMS3-201ENST00000437679 RALYQ9UKM9 306 aaKnown RBP14.82□□□□□ -0.04
LIMS3-201ENST00000437679 SOX13Q9UN79 622 aa14.82□□□□□ -0.04
LIMS3-201ENST00000437679 NEU2Q9Y3R4 380 aa14.82□□□□□ -0.04
LIMS3-201ENST00000437679 B3GALT1Q9Y5Z6 326 aa14.82□□□□□ -0.04
LIMS3-201ENST00000437679 OR5K3A6NET4 321 aa14.81□□□□□ -0.04
LIMS3-201ENST00000437679 STMND1H3BQB6 276 aa14.81□□□□□ -0.04
LIMS3-201ENST00000437679 MLNP12872 115 aa14.81□□□□□ -0.04
LIMS3-201ENST00000437679 PDHA2P29803 388 aa14.81□□□□□ -0.04
LIMS3-201ENST00000437679 BOP1Q14137 746 aaKnown RBP14.81□□□□□ -0.04
LIMS3-201ENST00000437679 PAPD7Q5XG87 772 aaKnown RBP14.81□□□□□ -0.04
LIMS3-201ENST00000437679 ANKS6Q68DC2 871 aa14.81□□□□□ -0.04
LIMS3-201ENST00000437679 GPR155Q7Z3F1 870 aa14.81□□□□□ -0.04
LIMS3-201ENST00000437679 PRSS42Q7Z5A4 293 aa14.81□□□□□ -0.04
LIMS3-201ENST00000437679 MPP5Q8N3R9 675 aa14.81□□□□□ -0.04
LIMS3-201ENST00000437679 ACVR1CQ8NER5 493 aa14.81□□□□□ -0.04
LIMS3-201ENST00000437679 TFGQ92734 400 aaPredicted RBP14.81□□□□□ -0.04
LIMS3-201ENST00000437679 PMEPA1Q969W9 287 aa14.81□□□□□ -0.04
LIMS3-201ENST00000437679 MFSD3Q96ES6 412 aa14.81□□□□□ -0.04
LIMS3-201ENST00000437679 CCNL2Q96S94 520 aaPredicted RBP14.81□□□□□ -0.04
LIMS3-201ENST00000437679 ZPBPQ9BS86 351 aa14.81□□□□□ -0.04
LIMS3-201ENST00000437679 ZNF768Q9H5H4 540 aaKnown RBP14.81□□□□□ -0.04
LIMS3-201ENST00000437679 MVB12BQ9H7P6 319 aa14.81□□□□□ -0.04
LIMS3-201ENST00000437679 HRASLS2Q9NWW9 162 aa14.81□□□□□ -0.04
LIMS3-201ENST00000437679 SAMD15Q9P1V8 674 aa14.81□□□□□ -0.04
LIMS3-201ENST00000437679 MARCH4Q9P2E8 410 aaPredicted RBP14.81□□□□□ -0.04
LIMS3-201ENST00000437679 SDK2Q58EX2 2172 aa14.81□□□□□ -0.04
LIMS3-201ENST00000437679 MAGEB16A2A368 324 aa14.8□□□□□ -0.04
LIMS3-201ENST00000437679 CTAGE9A4FU28 777 aa14.8□□□□□ -0.04
LIMS3-201ENST00000437679 SDR42E2A6NKP2 422 aa14.8□□□□□ -0.04
LIMS3-201ENST00000437679 IQCJ-SCHIP1C9J366 451 aaPredicted RBP14.8□□□□□ -0.04
LIMS3-201ENST00000437679 GOLGA8MH3BSY2 632 aa14.8□□□□□ -0.04
LIMS3-201ENST00000437679 PRMT5O14744 637 aaPredicted RBP14.8□□□□□ -0.04
LIMS3-201ENST00000437679 POLR1CO15160 346 aaPredicted RBP14.8□□□□□ -0.04
LIMS3-201ENST00000437679 KIF1CO43896 1103 aaKnown RBP14.8□□□□□ -0.04
LIMS3-201ENST00000437679 AVILO75366 819 aa14.8□□□□□ -0.04
LIMS3-201ENST00000437679 NDUFS3O75489 264 aa14.8□□□□□ -0.04
LIMS3-201ENST00000437679 TMEM63AO94886 807 aa14.8□□□□□ -0.04
LIMS3-201ENST00000437679 VAPBO95292 243 aa14.8□□□□□ -0.04
LIMS3-201ENST00000437679 PAMP19021 973 aa14.8□□□□□ -0.04
LIMS3-201ENST00000437679 ATP1A2P50993 1020 aa14.8□□□□□ -0.04
LIMS3-201ENST00000437679 FOXM1Q08050 763 aa14.8□□□□□ -0.04
LIMS3-201ENST00000437679 PRKAA1Q13131 559 aa14.8□□□□□ -0.04
LIMS3-201ENST00000437679 BRD3Q15059 726 aa14.8□□□□□ -0.04
LIMS3-201ENST00000437679 TGIF1Q15583 401 aa14.8□□□□□ -0.04
LIMS3-201ENST00000437679 DNTTIP2Q5QJE6 756 aaKnown RBP14.8□□□□□ -0.04
LIMS3-201ENST00000437679 MANEAQ5SRI9 462 aa14.8□□□□□ -0.04
LIMS3-201ENST00000437679 MRNIPQ6NTE8 343 aa14.8□□□□□ -0.04
LIMS3-201ENST00000437679 CES3Q6UWW8 571 aa14.8□□□□□ -0.04
LIMS3-201ENST00000437679 CCDC81Q6ZN84 652 aa14.8□□□□□ -0.04
LIMS3-201ENST00000437679 SDCCAG8Q86SQ7 713 aaPredicted RBP14.8□□□□□ -0.04
LIMS3-201ENST00000437679 LDB1Q86U70 411 aaPredicted RBP14.8□□□□□ -0.04
LIMS3-201ENST00000437679 CAND1Q86VP6 1230 aaKnown RBP14.8□□□□□ -0.04
LIMS3-201ENST00000437679 OR4E2Q8NGC2 313 aa14.8□□□□□ -0.04
LIMS3-201ENST00000437679 LCN9Q8WX39 176 aa14.8□□□□□ -0.04
LIMS3-201ENST00000437679 UBXN4Q92575 508 aa14.8□□□□□ -0.04
LIMS3-201ENST00000437679 CAPZA3Q96KX2 299 aa14.8□□□□□ -0.04
LIMS3-201ENST00000437679 CD180Q99467 661 aa14.8□□□□□ -0.04
LIMS3-201ENST00000437679 CTRCQ99895 268 aa14.8□□□□□ -0.04
LIMS3-201ENST00000437679 DDX47Q9H0S4 455 aaKnown RBP14.8□□□□□ -0.04
LIMS3-201ENST00000437679 SRMSQ9H3Y6 488 aa14.8□□□□□ -0.04
LIMS3-201ENST00000437679 CPNE5Q9HCH3 593 aa14.8□□□□□ -0.04
LIMS3-201ENST00000437679 SSUH2Q9Y2M2 353 aa14.8□□□□□ -0.04
LIMS3-201ENST00000437679 SAR1BQ9Y6B6 198 aa14.8□□□□□ -0.04
LIMS3-201ENST00000437679 UBA6A0AVT1 1052 aaPredicted RBP14.79□□□□□ -0.04
LIMS3-201ENST00000437679 SLC5A10A0PJK1 596 aa14.79□□□□□ -0.04
LIMS3-201ENST00000437679 OR6C74A6NCV1 312 aa14.79□□□□□ -0.04
LIMS3-201ENST00000437679 PFDN6O15212 129 aa14.79□□□□□ -0.04
LIMS3-201ENST00000437679 ITGB6P18564 788 aa14.79□□□□□ -0.04
LIMS3-201ENST00000437679 PPP1CAP62136 330 aa14.79□□□□□ -0.04
LIMS3-201ENST00000437679 VAC14Q08AM6 782 aa14.79□□□□□ -0.04
LIMS3-201ENST00000437679 ARHGAP40Q5TG30 622 aa14.79□□□□□ -0.04
LIMS3-201ENST00000437679 PTRHD1Q6GMV3 140 aaKnown RBP14.79□□□□□ -0.04
LIMS3-201ENST00000437679 KIAA0930Q6ICG6 404 aaPredicted RBP14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms