RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 NOXA1Q86UR1 476 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 PNPT1Q8TCS8 783 aaKnown RBP9.67□□□□□ -0.86
USP54-205ENST00000424265 MYDGFQ969H8 173 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 BBS2Q9BXC9 721 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 PRKD2Q9BZL6 878 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 TASP1Q9H6P5 420 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 PACSIN3Q9UKS6 424 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 A0A1B0GVM2 712 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 TCAF2A6NFQ2 919 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 RNGTTO60942 597 aaKnown RBP9.67□□□□□ -0.86
USP54-205ENST00000424265 PDE9AO76083 593 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 OLFM2O95897 454 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 CALCAP01258 141 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 GPLD1P80108 840 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 ABATP80404 500 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 TMPRSS9Q7Z410 1059 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 SFRP1Q8N474 314 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 SLC2A11Q9BYW1 496 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 PRRG3Q9BZD7 231 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 TRIM8Q9BZR9 551 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 CATSPERZQ9NTU4 200 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 CUEDC1Q9NWM3 386 aaPredicted RBP9.67□□□□□ -0.86
USP54-205ENST00000424265 KCNU1A8MYU2 1149 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 SGCEO43556 437 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 C1RP00736 705 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 POLBP06746 335 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 ARNTP27540 789 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 CSTF2P33240 577 aaKnown RBP eCLIP9.67□□□□□ -0.86
USP54-205ENST00000424265 ABCE1P61221 599 aaKnown RBP9.67□□□□□ -0.86
USP54-205ENST00000424265 CDKL1Q00532 357 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 PTK6Q13882 451 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 ZNF124Q15973 351 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 BTBD16Q32M84 506 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 SDHAF4Q5VUM1 108 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 AGAP6Q5VW22 663 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 RAP1GAP2Q684P5 730 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 DESI1Q6ICB0 168 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 TAC4Q86UU9 113 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 DENND1CQ8IV53 801 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 ADAM32Q8TC27 787 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 FRS2Q8WU20 508 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 AGAP4Q96P64 663 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 MND1Q9BWT6 205 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 POLR1EQ9GZS1 481 aaKnown RBP9.67□□□□□ -0.86
USP54-205ENST00000424265 MAGEH1Q9H213 219 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 ENPP5Q9UJA9 477 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 ABCG2Q9UNQ0 655 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 PARP14Q460N5 1801 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP9.67□□□□□ -0.86
USP54-205ENST00000424265 PTTG1O95997 202 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 PRG2P13727 222 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 TNNI3P19429 210 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 TACR2P21452 398 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 CAPZA1P52907 286 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 TRAF3Q13114 568 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 DPYSL2Q16555 572 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 LYSMD3Q7Z3D4 306 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 FBXO27Q8NI29 283 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 RNASE11Q8TAA1 199 aaKnown RBP9.67□□□□□ -0.86
USP54-205ENST00000424265 FAR1Q8WVX9 515 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 NPAP1Q9NZP6 1156 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 CFAP97Q9P2B7 532 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 AURKCQ9UQB9 309 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 GRXCR2A6NFK2 248 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 SLITRK5O94991 958 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 ALBP02768 609 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 ABHD2P08910 425 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 ME2P23368 584 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 NME5P56597 212 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 POLR2LP62875 67 aaKnown RBP9.66□□□□□ -0.86
USP54-205ENST00000424265 DEFB103AP81534 67 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 DENND5AQ6IQ26 1287 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 ZSCAN18Q8TBC5 510 aaPredicted RBP9.66□□□□□ -0.86
USP54-205ENST00000424265 KLHL5Q96PQ7 755 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 NSUN3Q9H649 340 aaKnown RBP9.66□□□□□ -0.86
USP54-205ENST00000424265 POLE3Q9NRF9 147 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 CHST7Q9NS84 486 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 YJEFN3A6XGL0 299 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 STK25O00506 426 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 RAB3AP20336 220 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 CA9Q16790 459 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 LEXMQ3ZCV2 418 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 TMEM240Q5SV17 173 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 EFL1Q7Z2Z2 1120 aaKnown RBP9.66□□□□□ -0.86
USP54-205ENST00000424265 RAB44Q7Z6P3 723 aaPredicted RBP9.66□□□□□ -0.86
USP54-205ENST00000424265 COMMD7Q86VX2 200 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 DEDD2Q8WXF8 326 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 SLC2A13Q96QE2 648 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 FZD10Q9ULW2 581 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 PRELID3BQ9Y3B1 194 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 A0A0A0MRY4 1105 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 PSIP1O75475 530 aaKnown RBP9.66□□□□□ -0.86
USP54-205ENST00000424265 BTF3P20290 206 aaKnown RBP9.66□□□□□ -0.86
USP54-205ENST00000424265 FSHRP23945 695 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 CORO1AP31146 461 aaKnown RBP9.66□□□□□ -0.86
USP54-205ENST00000424265 PTGIRP43119 386 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 ZNF33AQ06730 810 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 COTL1Q14019 142 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 HSD17B12Q53GQ0 312 aa9.66□□□□□ -0.86
USP54-205ENST00000424265 CCNYL2Q5T2Q4 361 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms