RNA–Protein interactions for RNA: ENST00000412061.3

BRCA1-204, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,312 nt, Biotype non stop decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-204ENST00000412061 ZNF410Q86VK4 478 aa4.43□□□□□ -1.7
BRCA1-204ENST00000412061 CAMK1DQ8IU85 385 aa4.43□□□□□ -1.7
BRCA1-204ENST00000412061 C4orf19Q8IY42 314 aa4.43□□□□□ -1.7
BRCA1-204ENST00000412061 EXOC6Q8TAG9 804 aa4.43□□□□□ -1.7
BRCA1-204ENST00000412061 RNASE8Q8TDE3 154 aaKnown RBP4.43□□□□□ -1.7
BRCA1-204ENST00000412061 CHURC1Q8WUH1 139 aa4.43□□□□□ -1.7
BRCA1-204ENST00000412061 DPF1Q92782 380 aa4.43□□□□□ -1.7
BRCA1-204ENST00000412061 TMEM186Q96B77 213 aa4.43□□□□□ -1.7
BRCA1-204ENST00000412061 FBXL8Q96CD0 374 aa4.43□□□□□ -1.7
BRCA1-204ENST00000412061 DTNBP1Q96EV8 351 aa4.43□□□□□ -1.7
BRCA1-204ENST00000412061 ALG14Q96F25 216 aa4.43□□□□□ -1.7
BRCA1-204ENST00000412061 ZNF419Q96HQ0 510 aaPredicted RBP4.43□□□□□ -1.7
BRCA1-204ENST00000412061 SAMD8Q96LT4 415 aa4.43□□□□□ -1.7
BRCA1-204ENST00000412061 SORCS2Q96PQ0 1159 aa4.43□□□□□ -1.7
BRCA1-204ENST00000412061 SEMA3CQ99985 751 aa4.43□□□□□ -1.7
BRCA1-204ENST00000412061 FAM110AQ9BQ89 295 aa4.43□□□□□ -1.7
BRCA1-204ENST00000412061 PCGF1Q9BSM1 259 aa4.43□□□□□ -1.7
BRCA1-204ENST00000412061 THUMPD2Q9BTF0 503 aaKnown RBP4.43□□□□□ -1.7
BRCA1-204ENST00000412061 GTPBP2Q9BX10 602 aaKnown RBP4.43□□□□□ -1.7
BRCA1-204ENST00000412061 VPS37BQ9H9H4 285 aa4.43□□□□□ -1.7
BRCA1-204ENST00000412061 RNF146Q9NTX7 359 aa4.43□□□□□ -1.7
BRCA1-204ENST00000412061 AGO2Q9UKV8 859 aaKnown RBP4.43□□□□□ -1.7
BRCA1-204ENST00000412061 MTUS1Q9ULD2 1270 aa4.43□□□□□ -1.7
BRCA1-204ENST00000412061 ERVK-11Q9UQG0 969 aa4.43□□□□□ -1.7
BRCA1-204ENST00000412061 A3GALT2U3KPV4 340 aa4.43□□□□□ -1.7
BRCA1-204ENST00000412061 C13orf42A0A1B0GVH6 325 aa4.42□□□□□ -1.7
BRCA1-204ENST00000412061 SMIM35A0A1B0GVV1 85 aa4.42□□□□□ -1.7
BRCA1-204ENST00000412061 C17orf102A2RUQ5 167 aa4.42□□□□□ -1.7
BRCA1-204ENST00000412061 CCDC169A6NNP5 214 aa4.42□□□□□ -1.7
BRCA1-204ENST00000412061 VCYO14598 125 aa4.42□□□□□ -1.7
BRCA1-204ENST00000412061 KLHL41O60662 606 aa4.42□□□□□ -1.7
BRCA1-204ENST00000412061 TSC22D2O75157 780 aa4.42□□□□□ -1.7
BRCA1-204ENST00000412061 BCAR3O75815 825 aa4.42□□□□□ -1.7
BRCA1-204ENST00000412061 TOMM70O94826 608 aa4.42□□□□□ -1.7
BRCA1-204ENST00000412061 SERPING1P05155 500 aa4.42□□□□□ -1.7
BRCA1-204ENST00000412061 SBK2P0C263 348 aa4.42□□□□□ -1.7
BRCA1-204ENST00000412061 NR2F2P24468 414 aa4.42□□□□□ -1.7
BRCA1-204ENST00000412061 ITGB8P26012 769 aa4.42□□□□□ -1.7
BRCA1-204ENST00000412061 TKTP29401 623 aaKnown RBP4.42□□□□□ -1.7
BRCA1-204ENST00000412061 CCND3P30281 292 aaPredicted RBP4.42□□□□□ -1.7
BRCA1-204ENST00000412061 GABRA5P31644 462 aa4.42□□□□□ -1.7
BRCA1-204ENST00000412061 KDRP35968 1356 aa4.42□□□□□ -1.7
BRCA1-204ENST00000412061 MDH1P40925 334 aaKnown RBP4.42□□□□□ -1.7
BRCA1-204ENST00000412061 CXCR3P49682 368 aa4.42□□□□□ -1.7
BRCA1-204ENST00000412061 SERPINH1P50454 418 aaKnown RBP4.42□□□□□ -1.7
BRCA1-204ENST00000412061 SPOCK1Q08629 439 aa4.42□□□□□ -1.7
BRCA1-204ENST00000412061 SREBF2Q12772 1141 aa4.42□□□□□ -1.7
BRCA1-204ENST00000412061 DPYSQ14117 519 aa4.42□□□□□ -1.7
BRCA1-204ENST00000412061 ARHGEF6Q15052 776 aa4.42□□□□□ -1.7
BRCA1-204ENST00000412061 CEBPEQ15744 281 aa4.42□□□□□ -1.7
BRCA1-204ENST00000412061 CDO1Q16878 200 aa4.42□□□□□ -1.7
BRCA1-204ENST00000412061 SOWAHAQ2M3V2 549 aa4.42□□□□□ -1.7
BRCA1-204ENST00000412061 TAF1BQ53T94 588 aaPredicted RBP4.42□□□□□ -1.7
BRCA1-204ENST00000412061 ENTPD8Q5MY95 495 aa4.42□□□□□ -1.7
BRCA1-204ENST00000412061 PRAMEF19Q5SWL8 479 aa4.42□□□□□ -1.7
BRCA1-204ENST00000412061 PODNL1Q6PEZ8 512 aa4.42□□□□□ -1.7
BRCA1-204ENST00000412061 PSRC1Q6PGN9 363 aaPredicted RBP4.42□□□□□ -1.7
BRCA1-204ENST00000412061 DEF8Q6ZN54 512 aa4.42□□□□□ -1.7
BRCA1-204ENST00000412061 DPPA4Q7L190 304 aa4.42□□□□□ -1.7
BRCA1-204ENST00000412061 NPHP3Q7Z494 1330 aa4.42□□□□□ -1.7
BRCA1-204ENST00000412061 PRIMA1Q86XR5 153 aa4.42□□□□□ -1.7
BRCA1-204ENST00000412061 TMC8Q8IU68 726 aa4.42□□□□□ -1.7
BRCA1-204ENST00000412061 UNC5CLQ8IV45 518 aa4.42□□□□□ -1.7
BRCA1-204ENST00000412061 CNGA4Q8IV77 575 aa4.42□□□□□ -1.7
BRCA1-204ENST00000412061 FOXP4Q8IVH2 680 aaPredicted RBP4.42□□□□□ -1.7
BRCA1-204ENST00000412061 BATF2Q8N1L9 274 aa4.42□□□□□ -1.7
BRCA1-204ENST00000412061 SLC25A41Q8N5S1 370 aa4.42□□□□□ -1.7
BRCA1-204ENST00000412061 CMASQ8NFW8 434 aaPredicted RBP4.42□□□□□ -1.7
BRCA1-204ENST00000412061 RNF183Q96D59 192 aa4.42□□□□□ -1.7
BRCA1-204ENST00000412061 MS4A10Q96PG2 267 aa4.42□□□□□ -1.7
BRCA1-204ENST00000412061 SIGLEC11Q96RL6 698 aa4.42□□□□□ -1.7
BRCA1-204ENST00000412061 ACOX2Q99424 681 aa4.42□□□□□ -1.7
BRCA1-204ENST00000412061 ERP44Q9BS26 406 aa4.42□□□□□ -1.7
BRCA1-204ENST00000412061 MRIQ9BWK5 157 aa4.42□□□□□ -1.7
BRCA1-204ENST00000412061 CARD6Q9BX69 1037 aa4.42□□□□□ -1.7
BRCA1-204ENST00000412061 AAMDCQ9H7C9 122 aa4.42□□□□□ -1.7
BRCA1-204ENST00000412061 SRD5A3Q9H8P0 318 aa4.42□□□□□ -1.7
BRCA1-204ENST00000412061 LMAN1LQ9HAT1 526 aa4.42□□□□□ -1.7
BRCA1-204ENST00000412061 RNPEPL1Q9HAU8 725 aa4.42□□□□□ -1.7
BRCA1-204ENST00000412061 SPAG4Q9NPE6 437 aa4.42□□□□□ -1.7
BRCA1-204ENST00000412061 NDRG3Q9UGV2 375 aa4.42□□□□□ -1.7
BRCA1-204ENST00000412061 TRMT6Q9UJA5 497 aaKnown RBP4.42□□□□□ -1.7
BRCA1-204ENST00000412061 SMC3Q9UQE7 1217 aa4.42□□□□□ -1.7
BRCA1-204ENST00000412061 NUDCQ9Y266 331 aa4.42□□□□□ -1.7
BRCA1-204ENST00000412061 ITM2BQ9Y287 266 aa4.42□□□□□ -1.7
BRCA1-204ENST00000412061 ZNF541Q9H0D2 1346 aa4.41□□□□□ -1.7
BRCA1-204ENST00000412061 A0A096LPK6 155 aa4.41□□□□□ -1.7
BRCA1-204ENST00000412061 TRBV5-3A0A0A0MS03 114 aa4.41□□□□□ -1.7
BRCA1-204ENST00000412061 A0A0U1RQF3 1178 aa4.41□□□□□ -1.7
BRCA1-204ENST00000412061 C2orf92A0A1B0GVN3 265 aa4.41□□□□□ -1.7
BRCA1-204ENST00000412061 CTAGE9A4FU28 777 aa4.41□□□□□ -1.7
BRCA1-204ENST00000412061 CFAP73A6NFT4 308 aa4.41□□□□□ -1.7
BRCA1-204ENST00000412061 ZSCAN5CA6NGD5 496 aaPredicted RBP4.41□□□□□ -1.7
BRCA1-204ENST00000412061 TMEM110-MUSTN1A8MSY1 372 aa4.41□□□□□ -1.7
BRCA1-204ENST00000412061 O00370 1275 aa4.41□□□□□ -1.7
BRCA1-204ENST00000412061 CLDN4O14493 209 aa4.41□□□□□ -1.7
BRCA1-204ENST00000412061 TOP1P11387 765 aaKnown RBP4.41□□□□□ -1.7
BRCA1-204ENST00000412061 UNGP13051 313 aaPredicted RBP4.41□□□□□ -1.7
BRCA1-204ENST00000412061 AREGP15514 252 aa4.41□□□□□ -1.7
BRCA1-204ENST00000412061 ACAT1P24752 427 aaKnown RBP4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms