RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 TAS2R39P59534 338 aa13.2□□□□□ -0.3
LIMS1-204ENST00000409441 RCN2Q14257 317 aa13.2□□□□□ -0.3
LIMS1-204ENST00000409441 DNAL1Q4LDG9 190 aa13.2□□□□□ -0.3
LIMS1-204ENST00000409441 ZNF648Q5T619 568 aaPredicted RBP13.2□□□□□ -0.3
LIMS1-204ENST00000409441 GPRC6AQ5T6X5 926 aa13.2□□□□□ -0.3
LIMS1-204ENST00000409441 LYPLAL1Q5VWZ2 237 aa13.2□□□□□ -0.3
LIMS1-204ENST00000409441 METTL21CQ5VZV1 264 aa13.2□□□□□ -0.3
LIMS1-204ENST00000409441 LAYNQ6UX15 382 aa13.2□□□□□ -0.3
LIMS1-204ENST00000409441 CERS6Q6ZMG9 384 aa13.2□□□□□ -0.3
LIMS1-204ENST00000409441 RINLQ6ZS11 566 aa13.2□□□□□ -0.3
LIMS1-204ENST00000409441 TRIM74Q86UV6 250 aa13.2□□□□□ -0.3
LIMS1-204ENST00000409441 IQCHQ86VS3 1027 aa13.2□□□□□ -0.3
LIMS1-204ENST00000409441 TREML1Q86YW5 311 aa13.2□□□□□ -0.3
LIMS1-204ENST00000409441 KCTD4Q8WVF5 259 aa13.2□□□□□ -0.3
LIMS1-204ENST00000409441 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.2□□□□□ -0.3
LIMS1-204ENST00000409441 MCUR1Q96AQ8 359 aa13.2□□□□□ -0.3
LIMS1-204ENST00000409441 GPR78Q96P69 363 aa13.2□□□□□ -0.3
LIMS1-204ENST00000409441 TTC1Q99614 292 aa13.2□□□□□ -0.3
LIMS1-204ENST00000409441 MRPL57Q9BQC6 102 aaKnown RBP13.2□□□□□ -0.3
LIMS1-204ENST00000409441 ILKAPQ9H0C8 392 aaPredicted RBP13.2□□□□□ -0.3
LIMS1-204ENST00000409441 C1orf21Q9H246 121 aa13.2□□□□□ -0.3
LIMS1-204ENST00000409441 MRPL46Q9H2W6 279 aaKnown RBP13.2□□□□□ -0.3
LIMS1-204ENST00000409441 TRIM39Q9HCM9 518 aa13.2□□□□□ -0.3
LIMS1-204ENST00000409441 ARMCX1Q9P291 453 aa13.2□□□□□ -0.3
LIMS1-204ENST00000409441 SUSD2Q9UGT4 822 aa13.2□□□□□ -0.3
LIMS1-204ENST00000409441 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.2□□□□□ -0.3
LIMS1-204ENST00000409441 TMEM98Q9Y2Y6 226 aa13.2□□□□□ -0.3
LIMS1-204ENST00000409441 WDFY4Q6ZS81 3184 aa13.2□□□□□ -0.3
LIMS1-204ENST00000409441 TMEM202A6NGA9 273 aa13.19□□□□□ -0.3
LIMS1-204ENST00000409441 VILLO15195 856 aa13.19□□□□□ -0.3
LIMS1-204ENST00000409441 NPHS1O60500 1241 aa13.19□□□□□ -0.3
LIMS1-204ENST00000409441 MAGEC1O60732 1142 aa13.19□□□□□ -0.3
LIMS1-204ENST00000409441 MTX2O75431 263 aa13.19□□□□□ -0.3
LIMS1-204ENST00000409441 ENO1P06733 434 aaKnown RBP13.19□□□□□ -0.3
LIMS1-204ENST00000409441 SBK3P0C264 359 aa13.19□□□□□ -0.3
LIMS1-204ENST00000409441 ACRV1P26436 265 aa13.19□□□□□ -0.3
LIMS1-204ENST00000409441 HTR1BP28222 390 aa13.19□□□□□ -0.3
LIMS1-204ENST00000409441 PPARGP37231 505 aaPredicted RBP13.19□□□□□ -0.3
LIMS1-204ENST00000409441 SLC26A3P40879 764 aa13.19□□□□□ -0.3
LIMS1-204ENST00000409441 DPP6P42658 865 aa13.19□□□□□ -0.3
LIMS1-204ENST00000409441 ALDH18A1P54886 795 aaKnown RBP13.19□□□□□ -0.3
LIMS1-204ENST00000409441 DNAJB13P59910 316 aa13.19□□□□□ -0.3
LIMS1-204ENST00000409441 TMEM115Q12893 351 aaPredicted RBP13.19□□□□□ -0.3
LIMS1-204ENST00000409441 PRKAA1Q13131 559 aa13.19□□□□□ -0.3
LIMS1-204ENST00000409441 NFATC4Q14934 902 aa13.19□□□□□ -0.3
LIMS1-204ENST00000409441 TEAD4Q15561 434 aa13.19□□□□□ -0.3
LIMS1-204ENST00000409441 AARS2Q5JTZ9 985 aaKnown RBP13.19□□□□□ -0.3
LIMS1-204ENST00000409441 CFAP157Q5JU67 520 aa13.19□□□□□ -0.3
LIMS1-204ENST00000409441 LDLRAP1Q5SW96 308 aa13.19□□□□□ -0.3
LIMS1-204ENST00000409441 TPRG1LQ5T0D9 272 aa13.19□□□□□ -0.3
LIMS1-204ENST00000409441 EPGNQ6UW88 154 aa13.19□□□□□ -0.3
LIMS1-204ENST00000409441 NAPRTQ6XQN6 538 aa13.19□□□□□ -0.3
LIMS1-204ENST00000409441 MAVSQ7Z434 540 aa13.19□□□□□ -0.3
LIMS1-204ENST00000409441 DCP2Q8IU60 420 aaKnown RBP13.19□□□□□ -0.3
LIMS1-204ENST00000409441 CILP2Q8IUL8 1156 aa13.19□□□□□ -0.3
LIMS1-204ENST00000409441 PHYKPLQ8IUZ5 450 aa13.19□□□□□ -0.3
LIMS1-204ENST00000409441 CEP97Q8IW35 865 aa13.19□□□□□ -0.3
LIMS1-204ENST00000409441 SLC22A18ASQ8N1D0 253 aa13.19□□□□□ -0.3
LIMS1-204ENST00000409441 FSTL5Q8N475 847 aaPredicted RBP13.19□□□□□ -0.3
LIMS1-204ENST00000409441 GPATCH11Q8N954 259 aa13.19□□□□□ -0.3
LIMS1-204ENST00000409441 SCG3Q8WXD2 468 aaKnown RBP13.19□□□□□ -0.3
LIMS1-204ENST00000409441 CCDC126Q96EE4 140 aa13.19□□□□□ -0.3
LIMS1-204ENST00000409441 TCF12Q99081 682 aa13.19□□□□□ -0.3
LIMS1-204ENST00000409441 COPS8Q99627 209 aa13.19□□□□□ -0.3
LIMS1-204ENST00000409441 ZDHHC3Q9NYG2 299 aa13.19□□□□□ -0.3
LIMS1-204ENST00000409441 NOP53Q9NZM5 478 aaKnown RBP13.19□□□□□ -0.3
LIMS1-204ENST00000409441 VTI1BQ9UEU0 232 aa13.19□□□□□ -0.3
LIMS1-204ENST00000409441 OAS3Q9Y6K5 1087 aaKnown RBP13.19□□□□□ -0.3
LIMS1-204ENST00000409441 CEP192Q8TEP8 1941 aa13.18□□□□□ -0.3
LIMS1-204ENST00000409441 B2RBV5 119 aa13.18□□□□□ -0.3
LIMS1-204ENST00000409441 TK2O00142 265 aa13.18□□□□□ -0.3
LIMS1-204ENST00000409441 MSH3P20585 1137 aa13.18□□□□□ -0.3
LIMS1-204ENST00000409441 PRDX6P30041 224 aa13.18□□□□□ -0.3
LIMS1-204ENST00000409441 HOXD12P35452 270 aa13.18□□□□□ -0.3
LIMS1-204ENST00000409441 TTPAP49638 278 aa13.18□□□□□ -0.3
LIMS1-204ENST00000409441 C21orf59P57076 290 aa13.18□□□□□ -0.3
LIMS1-204ENST00000409441 KIAA1024LP59773 190 aa13.18□□□□□ -0.3
LIMS1-204ENST00000409441 PTK2BQ14289 1009 aa13.18□□□□□ -0.3
LIMS1-204ENST00000409441 DUOXA1Q1HG43 343 aa13.18□□□□□ -0.3
LIMS1-204ENST00000409441 FAM83EQ2M2I3 478 aa13.18□□□□□ -0.3
LIMS1-204ENST00000409441 KHDC1Q4VXA5 237 aaKnown RBP13.18□□□□□ -0.3
LIMS1-204ENST00000409441 AGAP9Q5VTM2 703 aa13.18□□□□□ -0.3
LIMS1-204ENST00000409441 PEAR1Q5VY43 1037 aaPredicted RBP13.18□□□□□ -0.3
LIMS1-204ENST00000409441 LAIR1Q6GTX8 287 aa13.18□□□□□ -0.3
LIMS1-204ENST00000409441 KLC3Q6P597 504 aa13.18□□□□□ -0.3
LIMS1-204ENST00000409441 CNSTQ6PJW8 725 aa13.18□□□□□ -0.3
LIMS1-204ENST00000409441 DOK6Q6PKX4 331 aa13.18□□□□□ -0.3
LIMS1-204ENST00000409441 ENPP7Q6UWV6 458 aa13.18□□□□□ -0.3
LIMS1-204ENST00000409441 ATG14Q6ZNE5 492 aa13.18□□□□□ -0.3
LIMS1-204ENST00000409441 ADGRG6Q86SQ4 1221 aa13.18□□□□□ -0.3
LIMS1-204ENST00000409441 ZNF781Q8N8C0 355 aa13.18□□□□□ -0.3
LIMS1-204ENST00000409441 SUMF1Q8NBK3 374 aa13.18□□□□□ -0.3
LIMS1-204ENST00000409441 DDHD1Q8NEL9 900 aa13.18□□□□□ -0.3
LIMS1-204ENST00000409441 HEXDCQ8WVB3 486 aa13.18□□□□□ -0.3
LIMS1-204ENST00000409441 NXNL1Q96CM4 212 aa13.18□□□□□ -0.3
LIMS1-204ENST00000409441 DCUN1D1Q96GG9 259 aa13.18□□□□□ -0.3
LIMS1-204ENST00000409441 OR2AG1Q9H205 316 aa13.18□□□□□ -0.3
LIMS1-204ENST00000409441 ARRDC1-AS1Q9H2J1 176 aa13.18□□□□□ -0.3
LIMS1-204ENST00000409441 RNPEPL1Q9HAU8 725 aa13.18□□□□□ -0.3
LIMS1-204ENST00000409441 GPR27Q9NS67 375 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms