RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 ZNF823P16415 610 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 FGFR3P22607 806 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 EIF2S3P41091 472 aaKnown RBP6.01□□□□□ -1.45
SCN1A-203ENST00000409050 CLCN4P51793 760 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 PRKAG1P54619 331 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 RHEBQ15382 184 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 SEC23BQ15437 767 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.01□□□□□ -1.453e-6■■■□□ 18.5
SCN1A-203ENST00000409050 CES3Q6UWW8 571 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 CYP2U1Q7Z449 544 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 ALYREFQ86V81 257 aaKnown RBP6.01□□□□□ -1.45
SCN1A-203ENST00000409050 ZDHHC21Q8IVQ6 265 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 MCEMP1Q8IX19 187 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 SEMA4DQ92854 862 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 SLC35G5Q96KT7 338 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 TMEM209Q96SK2 561 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 GAD1Q99259 594 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 BTBD1Q9H0C5 482 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 MFSD1Q9H3U5 465 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 IPPKQ9H8X2 491 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 PCDHGA3Q9Y5H0 932 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 ALG5Q9Y673 324 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 ATP6AP2A0A1C7CYW4 349 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 PDPK1O15530 556 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 CSDE1O75534 798 aaKnown RBP6.01□□□□□ -1.45
SCN1A-203ENST00000409050 TIPRLO75663 272 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 AP2A2O94973 939 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 GADD45GO95257 159 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 TOP3BO95985 862 aaKnown RBP6.01□□□□□ -1.45
SCN1A-203ENST00000409050 C4BPAP04003 597 aaKnown RBP6.01□□□□□ -1.45
SCN1A-203ENST00000409050 AOC1P19801 751 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 FPR1P21462 350 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 KCNA5P22460 613 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 CDH8P55286 799 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 ADAM15Q13444 863 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 CPSF6Q16630 551 aaKnown RBP eCLIP6.01□□□□□ -1.45
SCN1A-203ENST00000409050 LY6KQ17RY6 165 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 IL23RQ5VWK5 629 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 TMEM110Q86TL2 294 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 SYVN1Q86TM6 617 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 DENND1CQ8IV53 801 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 CCDC54Q8NEL0 328 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 OR8H1Q8NGG4 311 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 CEP76Q8TAP6 659 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 GPER1Q99527 375 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 TTPALQ9BTX7 342 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 ITPAQ9BY32 194 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 MMP27Q9H306 513 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 FAM83DQ9H4H8 585 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 SERINC1Q9NRX5 453 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 GLS2Q9UI32 602 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 CNOT11Q9UKZ1 510 aaKnown RBP6.01□□□□□ -1.45
SCN1A-203ENST00000409050 A0A0G2JPF8 293 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 HNRNPCL3B7ZW38 293 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 K7EPI3 171 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 TSPAN1O60635 241 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 ZNF432O94892 652 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 ARHGEF15O94989 841 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 EOMESO95936 686 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 CYP17A1P05093 508 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 HNRNPCL4P0DMR1 293 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 CFL1P23528 166 aaKnown RBP6.01□□□□□ -1.45
SCN1A-203ENST00000409050 ECHS1P30084 290 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 MAPK12P53778 367 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 TMBIM6P55061 237 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 TAS2R40P59535 323 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 C2orf80Q0P641 193 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 DPYSL2Q16555 572 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 VARS2Q5ST30 1063 aaKnown RBP6.01□□□□□ -1.45
SCN1A-203ENST00000409050 VWA5B1Q5TIE3 1220 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 TPGS2Q68CL5 300 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 FIP1L1Q6UN15 594 aaKnown RBP6.01□□□□□ -1.45
SCN1A-203ENST00000409050 CHRDL2Q6WN34 429 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 USP30Q70CQ3 517 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 CBR4Q8N4T8 237 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 DQX1Q8TE96 717 aaKnown RBP6.01□□□□□ -1.45
SCN1A-203ENST00000409050 KLHL6Q8WZ60 621 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 TNFRSF25Q93038 417 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 CPXM1Q96SM3 734 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 NTPCRQ9BSD7 190 aaKnown RBP6.01□□□□□ -1.45
SCN1A-203ENST00000409050 IFT27Q9BW83 186 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 PLEKHA1Q9HB21 404 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 ACTR3BQ9P1U1 418 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 MLXQ9UH92 298 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 MRPS17Q9Y2R5 130 aaKnown RBP6.01□□□□□ -1.45
SCN1A-203ENST00000409050 COL5A2P05997 1499 aaPredicted RBP6.01□□□□□ -1.45
SCN1A-203ENST00000409050 KIF1AQ12756 1690 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 ABHD14A-ACY1A0A1B0GW23 586 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 FAM172BPA6NC97 362 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 WASHC1A8K0Z3 465 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 WASH3PC4AMC7 463 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 MT-ND2P03891 347 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 RB1P06400 928 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 AVPR1BP47901 424 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 RPIAP49247 311 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 SMSP52788 366 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 ABHD18Q0P651 414 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 USP4Q13107 963 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 SMU1Q2TAY7 513 aa6.01□□□□□ -1.45
SCN1A-203ENST00000409050 COQ5Q5HYK3 327 aa6.01□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms