RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 RDH11Q8TC12 318 aa13.94□□□□□ -0.18
SKA1-202ENST00000398452 EEF1AKMT1Q8WVE0 214 aa13.94□□□□□ -0.18
SKA1-202ENST00000398452 PDLIM5Q96HC4 596 aaKnown RBP13.94□□□□□ -0.18
SKA1-202ENST00000398452 HIST1H2AHQ96KK5 128 aa13.94□□□□□ -0.18
SKA1-202ENST00000398452 UBXN10Q96LJ8 280 aa13.94□□□□□ -0.18
SKA1-202ENST00000398452 HIST1H2AJQ99878 128 aa13.94□□□□□ -0.18
SKA1-202ENST00000398452 TIMM29Q9BSF4 260 aa13.94□□□□□ -0.18
SKA1-202ENST00000398452 H2AFJQ9BTM1 129 aa13.94□□□□□ -0.18
SKA1-202ENST00000398452 OSGEPL1Q9H4B0 414 aa13.94□□□□□ -0.18
SKA1-202ENST00000398452 COG4Q9H9E3 785 aa13.94□□□□□ -0.18
SKA1-202ENST00000398452 EBF2Q9HAK2 575 aa13.94□□□□□ -0.18
SKA1-202ENST00000398452 TMEM216Q9P0N5 145 aa13.94□□□□□ -0.18
SKA1-202ENST00000398452 NCDNQ9UBB6 729 aa13.94□□□□□ -0.18
SKA1-202ENST00000398452 GALPQ9UBC7 116 aa13.94□□□□□ -0.18
SKA1-202ENST00000398452 XPR1Q9UBH6 696 aa13.94□□□□□ -0.18
SKA1-202ENST00000398452 RNF112Q9ULX5 631 aa13.94□□□□□ -0.18
SKA1-202ENST00000398452 TMCO1Q9UM00 188 aa13.94□□□□□ -0.18
SKA1-202ENST00000398452 SUFUQ9UMX1 484 aa13.94□□□□□ -0.18
SKA1-202ENST00000398452 DNAJC16Q9Y2G8 782 aa13.94□□□□□ -0.18
SKA1-202ENST00000398452 MED16Q9Y2X0 877 aa13.94□□□□□ -0.18
SKA1-202ENST00000398452 PRKAB1Q9Y478 270 aa13.94□□□□□ -0.18
SKA1-202ENST00000398452 BCAT2O15382 392 aaPredicted RBP13.93□□□□□ -0.18
SKA1-202ENST00000398452 ZBTB14O43829 449 aa13.93□□□□□ -0.18
SKA1-202ENST00000398452 PLIN3O60664 434 aa13.93□□□□□ -0.18
SKA1-202ENST00000398452 SNX2O60749 519 aa13.93□□□□□ -0.18
SKA1-202ENST00000398452 RPN2P04844 631 aa13.93□□□□□ -0.18
SKA1-202ENST00000398452 C8GP07360 202 aa13.93□□□□□ -0.18
SKA1-202ENST00000398452 CYP2A7P20853 494 aa13.93□□□□□ -0.18
SKA1-202ENST00000398452 IDSP22304 550 aa13.93□□□□□ -0.18
SKA1-202ENST00000398452 MAOBP27338 520 aa13.93□□□□□ -0.18
SKA1-202ENST00000398452 CSRP3P50461 194 aa13.93□□□□□ -0.18
SKA1-202ENST00000398452 AFF3P51826 1226 aaKnown RBP13.93□□□□□ -0.18
SKA1-202ENST00000398452 ILF3Q12906 894 aaKnown RBP eCLIP13.93□□□□□ -0.18
SKA1-202ENST00000398452 RPA4Q13156 261 aa13.93□□□□□ -0.18
SKA1-202ENST00000398452 LRP8Q14114 963 aa13.93□□□□□ -0.18
SKA1-202ENST00000398452 ACSBG2Q5FVE4 666 aa13.93□□□□□ -0.18
SKA1-202ENST00000398452 TMEM207Q6UWW9 146 aa13.93□□□□□ -0.18
SKA1-202ENST00000398452 NAPRTQ6XQN6 538 aa13.93□□□□□ -0.18
SKA1-202ENST00000398452 PARGQ86W56 976 aa13.93□□□□□ -0.18
SKA1-202ENST00000398452 CENPLQ8N0S6 344 aaPredicted RBP13.93□□□□□ -0.18
SKA1-202ENST00000398452 PLD6Q8N2A8 252 aaKnown RBP13.93□□□□□ -0.18
SKA1-202ENST00000398452 FSTL5Q8N475 847 aaPredicted RBP13.93□□□□□ -0.18
SKA1-202ENST00000398452 GIMAP7Q8NHV1 300 aa13.93□□□□□ -0.18
SKA1-202ENST00000398452 RHEBL1Q8TAI7 183 aa13.93□□□□□ -0.18
SKA1-202ENST00000398452 MDM1Q8TC05 714 aa13.93□□□□□ -0.18
SKA1-202ENST00000398452 MAGEC3Q8TD91 643 aa13.93□□□□□ -0.18
SKA1-202ENST00000398452 ANKRD49Q8WVL7 239 aa13.93□□□□□ -0.18
SKA1-202ENST00000398452 EXT2Q93063 718 aa13.93□□□□□ -0.18
SKA1-202ENST00000398452 CCDC126Q96EE4 140 aa13.93□□□□□ -0.18
SKA1-202ENST00000398452 SLC30A3Q99726 388 aa13.93□□□□□ -0.18
SKA1-202ENST00000398452 UNKQ9C0B0 810 aaKnown RBP13.93□□□□□ -0.18
SKA1-202ENST00000398452 DPEP2Q9H4A9 486 aa13.93□□□□□ -0.18
SKA1-202ENST00000398452 ALG9Q9H6U8 611 aa13.93□□□□□ -0.18
SKA1-202ENST00000398452 TM9SF3Q9HD45 589 aa13.93□□□□□ -0.18
SKA1-202ENST00000398452 MLXIPLQ9NP71 852 aa13.93□□□□□ -0.18
SKA1-202ENST00000398452 IGSF5Q9NSI5 407 aa13.93□□□□□ -0.18
SKA1-202ENST00000398452 KLC4Q9NSK0 619 aa13.93□□□□□ -0.18
SKA1-202ENST00000398452 CPSF2Q9P2I0 782 aaKnown RBP13.93□□□□□ -0.18
SKA1-202ENST00000398452 SLC17A7Q9P2U7 560 aa13.93□□□□□ -0.18
SKA1-202ENST00000398452 ACSL5Q9ULC5 683 aa13.93□□□□□ -0.18
SKA1-202ENST00000398452 DMDP11532 3685 aa13.93□□□□□ -0.18
SKA1-202ENST00000398452 NPEPPSL1A6NEC2 478 aa13.92□□□□□ -0.18
SKA1-202ENST00000398452 PDZK1P1A8MUH7 402 aa13.92□□□□□ -0.18
SKA1-202ENST00000398452 SUPT3HB4E1H0 165 aa13.92□□□□□ -0.18
SKA1-202ENST00000398452 C10orf142B7Z368 130 aa13.92□□□□□ -0.18
SKA1-202ENST00000398452 TLR4O00206 839 aa13.92□□□□□ -0.18
SKA1-202ENST00000398452 SGTAO43765 313 aa13.92□□□□□ -0.18
SKA1-202ENST00000398452 SUPT3HO75486 399 aa13.92□□□□□ -0.18
SKA1-202ENST00000398452 CATP04040 527 aaKnown RBP13.92□□□□□ -0.18
SKA1-202ENST00000398452 SLC35G4P0C7Q5 338 aa13.92□□□□□ -0.18
SKA1-202ENST00000398452 TPBGLP0DKB5 382 aa13.92□□□□□ -0.18
SKA1-202ENST00000398452 TDGF1P13385 188 aa13.92□□□□□ -0.18
SKA1-202ENST00000398452 GFAPP14136 432 aa13.92□□□□□ -0.18
SKA1-202ENST00000398452 CPA3P15088 417 aa13.92□□□□□ -0.18
SKA1-202ENST00000398452 HALP42357 657 aa13.92□□□□□ -0.18
SKA1-202ENST00000398452 TIAL1Q01085 375 aaKnown RBP eCLIP13.92□□□□□ -0.18
SKA1-202ENST00000398452 SP140Q13342 867 aa13.92□□□□□ -0.18
SKA1-202ENST00000398452 SIM2Q14190 667 aaPredicted RBP13.92□□□□□ -0.18
SKA1-202ENST00000398452 KRT33BQ14525 404 aa13.92□□□□□ -0.18
SKA1-202ENST00000398452 PYCR3Q53H96 274 aa13.92□□□□□ -0.18
SKA1-202ENST00000398452 PMS2CLQ68D20 193 aa13.92□□□□□ -0.18
SKA1-202ENST00000398452 PRR23BQ6ZRT6 265 aa13.92□□□□□ -0.18
SKA1-202ENST00000398452 CDHR3Q6ZTQ4 885 aa13.92□□□□□ -0.18
SKA1-202ENST00000398452 PIWIL4Q7Z3Z4 852 aaKnown RBP13.92□□□□□ -0.18
SKA1-202ENST00000398452 RABEPKQ7Z6M1 372 aa13.92□□□□□ -0.18
SKA1-202ENST00000398452 GPSM1Q86YR5 675 aa13.92□□□□□ -0.18
SKA1-202ENST00000398452 NUDCD3Q8IVD9 361 aa13.92□□□□□ -0.18
SKA1-202ENST00000398452 SLC22A9Q8IVM8 553 aa13.92□□□□□ -0.18
SKA1-202ENST00000398452 OXR1Q8N573 874 aa13.92□□□□□ -0.18
SKA1-202ENST00000398452 SUMF1Q8NBK3 374 aa13.92□□□□□ -0.18
SKA1-202ENST00000398452 CFAP61Q8NHU2 1237 aa13.92□□□□□ -0.18
SKA1-202ENST00000398452 MCOLN3Q8TDD5 553 aa13.92□□□□□ -0.18
SKA1-202ENST00000398452 DNASE2BQ8WZ79 361 aa13.92□□□□□ -0.18
SKA1-202ENST00000398452 TSACCQ96A04 125 aaPredicted RBP13.92□□□□□ -0.18
SKA1-202ENST00000398452 KIAA1191Q96A73 305 aa13.92□□□□□ -0.18
SKA1-202ENST00000398452 GSDMCQ9BYG8 508 aa13.92□□□□□ -0.18
SKA1-202ENST00000398452 FGF22Q9HCT0 170 aa13.92□□□□□ -0.18
SKA1-202ENST00000398452 MRPL40Q9NQ50 206 aaKnown RBP13.92□□□□□ -0.18
SKA1-202ENST00000398452 ZNF358Q9NW07 568 aa13.92□□□□□ -0.18
SKA1-202ENST00000398452 RAB23Q9ULC3 237 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 81.6 ms