RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 PON2Q15165 354 aa10.13□□□□□ -0.79
LIMCH1-203ENST00000396595 KIAA0930Q6ICG6 404 aaPredicted RBP10.13□□□□□ -0.79
LIMCH1-203ENST00000396595 TMEM53Q6P2H8 277 aa10.13□□□□□ -0.79
LIMCH1-203ENST00000396595 CMTR2Q8IYT2 770 aaKnown RBP10.13□□□□□ -0.79
LIMCH1-203ENST00000396595 OR8D1Q8WZ84 308 aa10.13□□□□□ -0.79
LIMCH1-203ENST00000396595 ARHGEF28Q8N1W1 1705 aaKnown RBP10.13□□□□□ -0.79
LIMCH1-203ENST00000396595 CXCR6O00574 342 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 S100GP29377 79 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 ARFIP1P53367 373 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 MAP2K5Q13163 448 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 USP50Q70EL3 339 aaPredicted RBP10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 CFAP52Q8N1V2 620 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 RFKQ969G6 155 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 FCRL4Q96PJ5 515 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 HNRNPABQ99729 332 aaKnown RBP10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 NECTIN3Q9NQS3 549 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 SLC7A8Q9UHI5 535 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 CNOT6Q9ULM6 557 aaKnown RBP10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 COQ4Q9Y3A0 265 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 PPLO60437 1756 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 IQCMA0A1B0GVH7 501 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 C2orf74A8MZ97 194 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 ORC5O43913 435 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 GNRH1P01148 92 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 ICAM3P32942 547 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 RPIAP49247 311 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 TAS2R39P59534 338 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 HNRNPDQ14103 355 aaKnown RBP10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 LARS2Q15031 903 aaKnown RBP10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 ZDHHC21Q8IVQ6 265 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 DAW1Q8N136 415 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 CLIP3Q96DZ5 547 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 C12orf66Q96MD2 445 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 SIX2Q9NPC8 291 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 MRPS23Q9Y3D9 190 aaKnown RBP10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 BTBD19C9JJ37 291 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 MCIDASD6RGH6 385 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 PMM2O15305 246 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 REM1O75628 298 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 OR4F21O95013 312 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 RPLP0P05388 317 aaKnown RBP10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 ADH1AP07327 375 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 UNGP13051 313 aaPredicted RBP10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 LAMP2P13473 410 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 CYP3A5P20815 502 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 RPL26P61254 145 aaKnown RBP10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 LAPTM5Q13571 262 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 MYBPC3Q14896 1274 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 ASTE1Q2TB18 679 aaPredicted RBP10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 TMEM214Q6NUQ4 689 aaKnown RBP10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 CHERPQ8IWX8 916 aaKnown RBP10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 ELMOD2Q8IZ81 293 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 MPP5Q8N3R9 675 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 OR10A6Q8NH74 314 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 ZNF354BQ96LW1 612 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 TMEM27Q9HBJ8 222 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 ZNF214Q9UL59 606 aaPredicted RBP10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 ZSCAN5BA6NJL1 495 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 ZNF99A8MXY4 864 aaPredicted RBP10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 CCNB2O95067 398 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 ESR1P03372 595 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 TACR2P21452 398 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 ZNF132P52740 706 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 RGS8P57771 180 aaPredicted RBP10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 NAE1Q13564 534 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 LDB1Q86U70 411 aaPredicted RBP10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 CRYBG2Q8N1P7 616 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 PACRGLQ8N7B6 248 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 FAM156AQ8NDB6 213 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 OR5K1Q8NHB7 308 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 SPATA22Q8NHS9 363 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 PCDH19Q8TAB3 1148 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 SLC13A3Q8WWT9 602 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 TFAP2BQ92481 460 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 NSMCE3Q96MG7 304 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 YTHDF1Q9BYJ9 559 aaKnown RBP10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 TREM1Q9NP99 234 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 PLK2Q9NYY3 685 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 CKLFQ9UBR5 152 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 TP73O15350 636 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 CPNE3O75131 537 aaKnown RBP10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 C22orf31O95567 290 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 C1RP00736 705 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 IFNA6P05013 189 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 CD2P06729 351 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 ZNF14P17017 642 aaPredicted RBP10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 NR4A1P22736 598 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 AFF1P51825 1210 aaKnown RBP10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 NDST2P52849 883 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 GNG2P59768 71 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 CYP4F8P98187 520 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 MPPE1Q53F39 396 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 IFI44LQ53G44 452 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 NIPA2Q8N8Q9 360 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 DRAXINQ8NBI3 349 aaPredicted RBP10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 IPCEF1Q8WWN9 437 aaPredicted RBP10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 GATAD2BQ8WXI9 593 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 MAGEH1Q9H213 219 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 KCNN2Q9H2S1 579 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 PDZD7Q9H5P4 517 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms