RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 DET1Q7L5Y6 550 aa17.87■□□□□ 0.45
CCDC88C-203ENST00000389856 RP9Q8TA86 221 aaKnown RBP17.87■□□□□ 0.45
CCDC88C-203ENST00000389856 LKAAEAR1Q8TD35 194 aa17.87■□□□□ 0.45
CCDC88C-203ENST00000389856 DNAJC9Q8WXX5 260 aa17.87■□□□□ 0.45
CCDC88C-203ENST00000389856 ELMO1Q92556 727 aa17.87■□□□□ 0.45
CCDC88C-203ENST00000389856 TRIM39Q9HCM9 518 aa17.87■□□□□ 0.45
CCDC88C-203ENST00000389856 PREBQ9HCU5 417 aa17.87■□□□□ 0.45
CCDC88C-203ENST00000389856 PRPF19Q9UMS4 504 aaKnown RBP17.87■□□□□ 0.45
CCDC88C-203ENST00000389856 COQ6Q9Y2Z9 468 aa17.87■□□□□ 0.45
CCDC88C-203ENST00000389856 OARD1Q9Y530 152 aa17.87■□□□□ 0.45
CCDC88C-203ENST00000389856 SEC23IPQ9Y6Y8 1000 aaKnown RBP17.87■□□□□ 0.45
CCDC88C-203ENST00000389856 ASGR2P07307 311 aa17.87■□□□□ 0.45
CCDC88C-203ENST00000389856 RPSAP08865 295 aaKnown RBP17.87■□□□□ 0.45
CCDC88C-203ENST00000389856 VCLP18206 1134 aa17.87■□□□□ 0.45
CCDC88C-203ENST00000389856 MPSTP25325 297 aa17.87■□□□□ 0.45
CCDC88C-203ENST00000389856 KCNC1P48547 511 aa17.87■□□□□ 0.45
CCDC88C-203ENST00000389856 PRLHRP49683 370 aa17.87■□□□□ 0.45
CCDC88C-203ENST00000389856 CLNS1AP54105 237 aaKnown RBP17.87■□□□□ 0.45
CCDC88C-203ENST00000389856 PLOD1Q02809 727 aaPredicted RBP17.87■□□□□ 0.45
CCDC88C-203ENST00000389856 SGCGQ13326 291 aa17.87■□□□□ 0.45
CCDC88C-203ENST00000389856 TGFBIQ15582 683 aa17.87■□□□□ 0.45
CCDC88C-203ENST00000389856 BCL7AQ4VC05 210 aa17.87■□□□□ 0.45
CCDC88C-203ENST00000389856 METTL2BQ6P1Q9 378 aaKnown RBP17.87■□□□□ 0.45
CCDC88C-203ENST00000389856 FAM131CQ96AQ9 280 aa17.87■□□□□ 0.45
CCDC88C-203ENST00000389856 SIPA1Q96FS4 1042 aa17.87■□□□□ 0.45
CCDC88C-203ENST00000389856 HIC2Q96JB3 615 aa17.87■□□□□ 0.45
CCDC88C-203ENST00000389856 CCM2Q9BSQ5 444 aa17.87■□□□□ 0.45
CCDC88C-203ENST00000389856 C1QTNF3Q9BXJ4 246 aa17.87■□□□□ 0.45
CCDC88C-203ENST00000389856 RDH14Q9HBH5 336 aa17.87■□□□□ 0.45
CCDC88C-203ENST00000389856 MTF2Q9Y483 593 aaPredicted RBP17.87■□□□□ 0.45
CCDC88C-203ENST00000389856 GIPC1O14908 333 aa17.86■□□□□ 0.45
CCDC88C-203ENST00000389856 INPP4BO15327 924 aa17.86■□□□□ 0.45
CCDC88C-203ENST00000389856 GRID2O43424 1007 aa17.86■□□□□ 0.45
CCDC88C-203ENST00000389856 PLRG1O43660 514 aaKnown RBP17.86■□□□□ 0.45
CCDC88C-203ENST00000389856 ADAM23O75077 832 aa17.86■□□□□ 0.45
CCDC88C-203ENST00000389856 CDK14O94921 469 aa17.86■□□□□ 0.45
CCDC88C-203ENST00000389856 MLYCDO95822 493 aa17.86■□□□□ 0.45
CCDC88C-203ENST00000389856 C7P10643 843 aa17.86■□□□□ 0.45
CCDC88C-203ENST00000389856 MTHFD2P13995 350 aa17.86■□□□□ 0.45
CCDC88C-203ENST00000389856 CCR7P32248 378 aa17.86■□□□□ 0.45
CCDC88C-203ENST00000389856 BOP1Q14137 746 aaKnown RBP17.86■□□□□ 0.45
CCDC88C-203ENST00000389856 MUM1Q2TAK8 710 aa17.86■□□□□ 0.45
CCDC88C-203ENST00000389856 MAP7D1Q3KQU3 841 aa17.86■□□□□ 0.45
CCDC88C-203ENST00000389856 VWA5B1Q5TIE3 1220 aa17.86■□□□□ 0.45
CCDC88C-203ENST00000389856 KIAA1211LQ6NV74 962 aa17.86■□□□□ 0.45
CCDC88C-203ENST00000389856 TTC23LQ6PF05 361 aa17.86■□□□□ 0.45
CCDC88C-203ENST00000389856 C16orf89Q6UX73 402 aa17.86■□□□□ 0.45
CCDC88C-203ENST00000389856 ZNF852Q6ZMS4 543 aa17.86■□□□□ 0.45
CCDC88C-203ENST00000389856 LRRC74BQ6ZQY2 392 aa17.86■□□□□ 0.45
CCDC88C-203ENST00000389856 CACUL1Q86Y37 369 aa17.86■□□□□ 0.45
CCDC88C-203ENST00000389856 TCAIMQ8N3R3 496 aa17.86■□□□□ 0.45
CCDC88C-203ENST00000389856 FBXO27Q8NI29 283 aa17.86■□□□□ 0.45
CCDC88C-203ENST00000389856 TMEM159Q96B96 161 aa17.86■□□□□ 0.45
CCDC88C-203ENST00000389856 CCDC97Q96F63 343 aaPredicted RBP17.86■□□□□ 0.45
CCDC88C-203ENST00000389856 MMP17Q9ULZ9 603 aa17.86■□□□□ 0.45
CCDC88C-203ENST00000389856 MRPS17Q9Y2R5 130 aaKnown RBP17.86■□□□□ 0.45
CCDC88C-203ENST00000389856 A0A1W2PQF6 199 aa17.85■□□□□ 0.45
CCDC88C-203ENST00000389856 IGLON5A6NGN9 336 aa17.85■□□□□ 0.45
CCDC88C-203ENST00000389856 VGLL3A8MV65 326 aa17.85■□□□□ 0.45
CCDC88C-203ENST00000389856 GPR89AB7ZAQ6 455 aa17.85■□□□□ 0.45
CCDC88C-203ENST00000389856 DCXO43602 365 aa17.85■□□□□ 0.45
CCDC88C-203ENST00000389856 CHRNGP07510 517 aa17.85■□□□□ 0.45
CCDC88C-203ENST00000389856 HIST1H2AGP0C0S8 130 aaPredicted RBP17.85■□□□□ 0.45
CCDC88C-203ENST00000389856 GPR89BP0CG08 455 aa17.85■□□□□ 0.45
CCDC88C-203ENST00000389856 HIST1H2ADP20671 130 aa17.85■□□□□ 0.45
CCDC88C-203ENST00000389856 TAS2R38P59533 333 aa17.85■□□□□ 0.45
CCDC88C-203ENST00000389856 HSPA14Q0VDF9 509 aa17.85■□□□□ 0.45
CCDC88C-203ENST00000389856 LRRC32Q14392 662 aa17.85■□□□□ 0.45
CCDC88C-203ENST00000389856 GBX1Q14549 363 aa17.85■□□□□ 0.45
CCDC88C-203ENST00000389856 SULT1C3Q6IMI6 304 aa17.85■□□□□ 0.45
CCDC88C-203ENST00000389856 EFL1Q7Z2Z2 1120 aaKnown RBP17.85■□□□□ 0.45
CCDC88C-203ENST00000389856 LSMEM2Q8N112 164 aa17.85■□□□□ 0.45
CCDC88C-203ENST00000389856 SYNPOQ8N3V7 929 aa17.85■□□□□ 0.45
CCDC88C-203ENST00000389856 RASGEF1AQ8N9B8 481 aa17.85■□□□□ 0.45
CCDC88C-203ENST00000389856 PDPRQ8NCN5 879 aa17.85■□□□□ 0.45
CCDC88C-203ENST00000389856 OR14C36Q8NHC7 312 aa17.85■□□□□ 0.45
CCDC88C-203ENST00000389856 RPLP0P6Q8NHW5 317 aa17.85■□□□□ 0.45
CCDC88C-203ENST00000389856 SKA2Q8WVK7 121 aaPredicted RBP17.85■□□□□ 0.45
CCDC88C-203ENST00000389856 GLMNQ92990 594 aa17.85■□□□□ 0.45
CCDC88C-203ENST00000389856 HIST1H2AHQ96KK5 128 aa17.85■□□□□ 0.45
CCDC88C-203ENST00000389856 MYCBPQ99417 103 aaPredicted RBP17.85■□□□□ 0.45
CCDC88C-203ENST00000389856 SERPINI1Q99574 410 aa17.85■□□□□ 0.45
CCDC88C-203ENST00000389856 HIST1H2AJQ99878 128 aa17.85■□□□□ 0.45
CCDC88C-203ENST00000389856 H2AFJQ9BTM1 129 aa17.85■□□□□ 0.45
CCDC88C-203ENST00000389856 GSTO2Q9H4Y5 243 aa17.85■□□□□ 0.45
CCDC88C-203ENST00000389856 ZNF385DQ9H6B1 395 aa17.85■□□□□ 0.45
CCDC88C-203ENST00000389856 PFDN4Q9NQP4 134 aa17.85■□□□□ 0.45
CCDC88C-203ENST00000389856 BCAP29Q9UHQ4 241 aa17.85■□□□□ 0.45
CCDC88C-203ENST00000389856 GPR34Q9UPC5 381 aa17.85■□□□□ 0.45
CCDC88C-203ENST00000389856 KLHL33A6NCF5 533 aa17.84■□□□□ 0.45
CCDC88C-203ENST00000389856 OR2AG2A6NM03 316 aa17.84■□□□□ 0.45
CCDC88C-203ENST00000389856 FFAR2O15552 330 aa17.84■□□□□ 0.45
CCDC88C-203ENST00000389856 MAP3K7O43318 606 aa17.84■□□□□ 0.45
CCDC88C-203ENST00000389856 MTX2O75431 263 aa17.84■□□□□ 0.45
CCDC88C-203ENST00000389856 RPS17P08708 135 aaKnown RBP17.84■□□□□ 0.45
CCDC88C-203ENST00000389856 CYP2A7P20853 494 aa17.84■□□□□ 0.45
CCDC88C-203ENST00000389856 EEF1DP29692 281 aaKnown RBP17.84■□□□□ 0.45
CCDC88C-203ENST00000389856 PRKCQQ04759 706 aa17.84■□□□□ 0.45
CCDC88C-203ENST00000389856 LCP2Q13094 533 aa17.84■□□□□ 0.45
CCDC88C-203ENST00000389856 MLF2Q15773 248 aaPredicted RBP17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms