RNA–Protein interactions for RNA: ENST00000378060.8

VPS36-201, Transcript of vacuolar protein sorting 36 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS36, Length 4,417 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS36-201ENST00000378060 SDC2P34741 201 aa8.28□□□□□ -1.08
VPS36-201ENST00000378060 NDUFV1P49821 464 aa8.28□□□□□ -1.08
VPS36-201ENST00000378060 RPS14P62263 151 aaKnown RBP8.28□□□□□ -1.08
VPS36-201ENST00000378060 FCHO2Q0JRZ9 810 aa8.28□□□□□ -1.08
VPS36-201ENST00000378060 MTAPQ13126 283 aa8.28□□□□□ -1.08
VPS36-201ENST00000378060 IKBKEQ14164 716 aa8.28□□□□□ -1.08
VPS36-201ENST00000378060 PAFAH1B3Q15102 231 aaKnown RBP8.28□□□□□ -1.08
VPS36-201ENST00000378060 TAF1AQ15573 450 aaPredicted RBP8.28□□□□□ -1.08
VPS36-201ENST00000378060 SOWAHAQ2M3V2 549 aa8.28□□□□□ -1.08
VPS36-201ENST00000378060 HKDC1Q2TB90 917 aa8.28□□□□□ -1.08
VPS36-201ENST00000378060 PDCD4Q53EL6 469 aaKnown RBP8.28□□□□□ -1.08
VPS36-201ENST00000378060 GCNT6Q5T4J0 391 aa8.28□□□□□ -1.08
VPS36-201ENST00000378060 CYS1Q717R9 158 aa8.28□□□□□ -1.08
VPS36-201ENST00000378060 GJD3Q8N144 294 aa8.28□□□□□ -1.08
VPS36-201ENST00000378060 CFAP52Q8N1V2 620 aa8.28□□□□□ -1.08
VPS36-201ENST00000378060 CXorf40AQ8TE69 158 aa8.28□□□□□ -1.08
VPS36-201ENST00000378060 KCTD13Q8WZ19 329 aa8.28□□□□□ -1.08
VPS36-201ENST00000378060 TTPALQ9BTX7 342 aa8.28□□□□□ -1.08
VPS36-201ENST00000378060 HIPK3Q9H422 1215 aa8.28□□□□□ -1.08
VPS36-201ENST00000378060 MAGEE1Q9HCI5 957 aa8.28□□□□□ -1.08
VPS36-201ENST00000378060 HMX1Q9NP08 348 aaPredicted RBP8.28□□□□□ -1.08
VPS36-201ENST00000378060 DKK3Q9UBP4 350 aa8.28□□□□□ -1.08
VPS36-201ENST00000378060 A8MT66 165 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 C1QTNF3-AMACRE9PGA6 284 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 IRAK2O43187 625 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 SLC28A2O43868 658 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 LMO2P25791 158 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 ECHS1P30084 290 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 SEPHS1P49903 392 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 ATXN1P54253 815 aaKnown RBP8.27□□□□□ -1.09
VPS36-201ENST00000378060 RFTN1Q14699 578 aaPredicted RBP8.27□□□□□ -1.09
VPS36-201ENST00000378060 C5orf22Q49AR2 442 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 CMPK2Q5EBM0 449 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 LIN54Q6MZP7 749 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 OLFML1Q6UWY5 402 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 C17orf64Q86WR6 236 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 SLC35F5Q8WV83 523 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 FUBP3Q96I24 572 aaKnown RBP eCLIP8.27□□□□□ -1.09
VPS36-201ENST00000378060 KLHL32Q96NJ5 620 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 SEMA3GQ9NS98 782 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 EXD2Q9NVH0 621 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 EIF2B4Q9UI10 523 aaKnown RBP8.27□□□□□ -1.09
VPS36-201ENST00000378060 RUVBL1Q9Y265 456 aaKnown RBP8.27□□□□□ -1.09
VPS36-201ENST00000378060 LAMA3Q16787 3333 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 FAM47E-STBD1D6RA91 191 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 SLC30A4O14863 429 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 TFECO14948 347 aaPredicted RBP8.27□□□□□ -1.09
VPS36-201ENST00000378060 SSNA1O43805 119 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 PGK1P00558 417 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 ANXA8P13928 327 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 NCK1P16333 377 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 ZNF460Q14592 562 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 SKIV2LQ15477 1246 aaKnown RBP8.27□□□□□ -1.09
VPS36-201ENST00000378060 TCEA2Q15560 299 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 FAM174BQ3ZCQ3 159 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 TNFAIP8L3Q5GJ75 292 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 HLA-DQA1Q5Y7H0 255 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 RAET1GQ6H3X3 334 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 DOK6Q6PKX4 331 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 TMPRSS11AQ6ZMR5 421 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 DEF8Q6ZN54 512 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 SLC24A5Q71RS6 500 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 ERMP1Q7Z2K6 904 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 PARP8Q8N3A8 854 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 C9orf43Q8TAL5 461 aaPredicted RBP8.27□□□□□ -1.09
VPS36-201ENST00000378060 TSPEARQ8WU66 669 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 PPP1R13LQ8WUF5 828 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 ANKRD49Q8WVL7 239 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 HMCESQ96FZ2 354 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 ZNF599Q96NL3 588 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 ASAH2Q9NR71 780 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 SEC14L3Q9UDX4 400 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 OAZ3Q9UMX2 235 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 STON1Q9Y6Q2 735 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 NEMP2A6NFY4 417 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 C9JVG2 144 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 OR6A2O95222 327 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 PRAMEF1O95521 474 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 ANXA4P09525 319 aaPredicted RBP8.27□□□□□ -1.09
VPS36-201ENST00000378060 BUD31P41223 144 aaPredicted RBP8.27□□□□□ -1.09
VPS36-201ENST00000378060 IRF9Q00978 393 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 PRKCZQ05513 592 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 INCA1Q0VD86 236 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 DUSP4Q13115 394 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 PLEKHG6Q3KR16 790 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 CPNE9Q8IYJ1 553 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 PHTF2Q8N3S3 785 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 DNAJC5GQ8N7S2 189 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 DENND1AQ8TEH3 1009 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 ZNF296Q8WUU4 475 aaPredicted RBP8.27□□□□□ -1.09
VPS36-201ENST00000378060 TWNKQ96RR1 684 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 ZNF347Q96SE7 839 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 PKP2Q99959 881 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 COPS4Q9BT78 406 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 RACGAP1Q9H0H5 632 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 TPK1Q9H3S4 243 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 ASF1AQ9Y294 204 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 PCDHGA11Q9Y5H2 935 aa8.27□□□□□ -1.09
VPS36-201ENST00000378060 SYN3O14994 580 aa8.26□□□□□ -1.09
VPS36-201ENST00000378060 ARPC2O15144 300 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms