RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 NUDT17P0C025 328 aa13.53□□□□□ -0.24
COL4A1-201ENST00000375820 PSMA1P25786 263 aaKnown RBP13.53□□□□□ -0.24
COL4A1-201ENST00000375820 LMO2P25791 158 aa13.53□□□□□ -0.24
COL4A1-201ENST00000375820 PEX2P28328 305 aa13.53□□□□□ -0.24
COL4A1-201ENST00000375820 EIF1AXP47813 144 aaKnown RBP13.53□□□□□ -0.24
COL4A1-201ENST00000375820 TUSC3Q13454 348 aa13.53□□□□□ -0.24
COL4A1-201ENST00000375820 KIAA1161Q6NSJ0 714 aa13.53□□□□□ -0.24
COL4A1-201ENST00000375820 GPR153Q6NV75 609 aa13.53□□□□□ -0.24
COL4A1-201ENST00000375820 RGMBQ6NW40 437 aa13.53□□□□□ -0.24
COL4A1-201ENST00000375820 ZCCHC12Q6PEW1 402 aa13.53□□□□□ -0.24
COL4A1-201ENST00000375820 ZNF554Q86TJ5 538 aa13.53□□□□□ -0.24
COL4A1-201ENST00000375820 METTL3Q86U44 580 aaKnown RBP13.53□□□□□ -0.24
COL4A1-201ENST00000375820 PLD5Q8N7P1 536 aa13.53□□□□□ -0.24
COL4A1-201ENST00000375820 BRSK1Q8TDC3 778 aa13.53□□□□□ -0.24
COL4A1-201ENST00000375820 CPT1BQ92523 772 aa13.53□□□□□ -0.24
COL4A1-201ENST00000375820 SRMSQ9H3Y6 488 aa13.53□□□□□ -0.24
COL4A1-201ENST00000375820 PARPBPQ9NWS1 579 aa13.53□□□□□ -0.24
COL4A1-201ENST00000375820 ZC3H13Q5T200 1668 aaKnown RBP13.53□□□□□ -0.24
COL4A1-201ENST00000375820 CYP3A7-CYP3A51PA0A087WV96 503 aa13.53□□□□□ -0.24
COL4A1-201ENST00000375820 OR51F1A6NGY5 319 aa13.53□□□□□ -0.24
COL4A1-201ENST00000375820 CYP3A7P24462 503 aa13.53□□□□□ -0.24
COL4A1-201ENST00000375820 CRTC2Q53ET0 693 aaPredicted RBP13.53□□□□□ -0.24
COL4A1-201ENST00000375820 TTC29Q8NA56 475 aaPredicted RBP13.53□□□□□ -0.24
COL4A1-201ENST00000375820 GPR151Q8TDV0 419 aa13.53□□□□□ -0.24
COL4A1-201ENST00000375820 PCED1BQ96HM7 432 aa13.53□□□□□ -0.24
COL4A1-201ENST00000375820 C12orf66Q96MD2 445 aa13.53□□□□□ -0.24
COL4A1-201ENST00000375820 OR6C75A6NL08 312 aa13.52□□□□□ -0.24
COL4A1-201ENST00000375820 CLDN4O14493 209 aa13.52□□□□□ -0.24
COL4A1-201ENST00000375820 PGLSO95336 258 aa13.52□□□□□ -0.24
COL4A1-201ENST00000375820 PDX1P52945 283 aa13.52□□□□□ -0.24
COL4A1-201ENST00000375820 TARDBPQ13148 414 aaKnown RBP eCLIP13.52□□□□□ -0.24
COL4A1-201ENST00000375820 SH3PXD2AQ5TCZ1 1133 aa13.52□□□□□ -0.24
COL4A1-201ENST00000375820 BICRALQ6AI39 1079 aa13.52□□□□□ -0.24
COL4A1-201ENST00000375820 CLNKQ7Z7G1 428 aa13.52□□□□□ -0.24
COL4A1-201ENST00000375820 ECHDC2Q86YB7 292 aa13.52□□□□□ -0.24
COL4A1-201ENST00000375820 BEND7Q8N7W2 519 aaPredicted RBP13.52□□□□□ -0.24
COL4A1-201ENST00000375820 ANKFN1Q8N957 763 aa13.52□□□□□ -0.24
COL4A1-201ENST00000375820 OR4C6Q8NH72 309 aa13.52□□□□□ -0.24
COL4A1-201ENST00000375820 PPTC7Q8NI37 304 aa13.52□□□□□ -0.24
COL4A1-201ENST00000375820 HERVK_113Q902F9 699 aa13.52□□□□□ -0.24
COL4A1-201ENST00000375820 UPF1Q92900 1129 aaKnown RBP eCLIP13.52□□□□□ -0.24
COL4A1-201ENST00000375820 GAS2L1Q99501 681 aaPredicted RBP13.52□□□□□ -0.24
COL4A1-201ENST00000375820 DNAAF2Q9NVR5 837 aaKnown RBP13.52□□□□□ -0.24
COL4A1-201ENST00000375820 TARBP1Q13395 1621 aaKnown RBP13.52□□□□□ -0.24
COL4A1-201ENST00000375820 AIREO43918 545 aa13.52□□□□□ -0.24
COL4A1-201ENST00000375820 MTHFD1P11586 935 aaKnown RBP13.52□□□□□ -0.24
COL4A1-201ENST00000375820 IL7RP16871 459 aa13.52□□□□□ -0.24
COL4A1-201ENST00000375820 CHRNA4P43681 627 aa13.52□□□□□ -0.24
COL4A1-201ENST00000375820 CASP7P55210 303 aa13.52□□□□□ -0.24
COL4A1-201ENST00000375820 VBP1P61758 197 aa13.52□□□□□ -0.24
COL4A1-201ENST00000375820 CSTF1Q05048 431 aaKnown RBP13.52□□□□□ -0.24
COL4A1-201ENST00000375820 UBXN2BQ14CS0 331 aa13.52□□□□□ -0.24
COL4A1-201ENST00000375820 PPP1R15BQ5SWA1 713 aa13.52□□□□□ -0.24
COL4A1-201ENST00000375820 PDE12Q6L8Q7 609 aaKnown RBP13.52□□□□□ -0.24
COL4A1-201ENST00000375820 ARMCX6Q7L4S7 300 aa13.52□□□□□ -0.24
COL4A1-201ENST00000375820 COX18Q8N8Q8 333 aa13.52□□□□□ -0.24
COL4A1-201ENST00000375820 BORCS5Q969J3 196 aa13.52□□□□□ -0.24
COL4A1-201ENST00000375820 LENG8Q96PV6 779 aaPredicted RBP13.52□□□□□ -0.24
COL4A1-201ENST00000375820 SPATA9Q9BWV2 254 aa13.52□□□□□ -0.24
COL4A1-201ENST00000375820 FAM83DQ9H4H8 585 aa13.52□□□□□ -0.24
COL4A1-201ENST00000375820 PRMT3O60678 531 aa13.52□□□□□ -0.25
COL4A1-201ENST00000375820 GDF6Q6KF10 455 aaPredicted RBP13.52□□□□□ -0.25
COL4A1-201ENST00000375820 CAND1Q86VP6 1230 aaKnown RBP13.52□□□□□ -0.25
COL4A1-201ENST00000375820 GPR20Q99678 358 aa13.52□□□□□ -0.25
COL4A1-201ENST00000375820 AMBNQ9NP70 447 aa13.52□□□□□ -0.25
COL4A1-201ENST00000375820 MGAT4AQ9UM21 535 aa13.52□□□□□ -0.25
COL4A1-201ENST00000375820 REXO2Q9Y3B8 237 aaKnown RBP13.52□□□□□ -0.25
COL4A1-201ENST00000375820 PCDHB1Q9Y5F3 818 aa13.52□□□□□ -0.25
COL4A1-201ENST00000375820 MTX2O75431 263 aa13.52□□□□□ -0.25
COL4A1-201ENST00000375820 PSKH1P11801 424 aa13.52□□□□□ -0.25
COL4A1-201ENST00000375820 ZNF823P16415 610 aa13.52□□□□□ -0.25
COL4A1-201ENST00000375820 RPS9P46781 194 aaKnown RBP13.52□□□□□ -0.25
COL4A1-201ENST00000375820 SPATC1Q76KD6 591 aa13.52□□□□□ -0.25
COL4A1-201ENST00000375820 ZBTB8BQ8NAP8 495 aaPredicted RBP13.52□□□□□ -0.25
COL4A1-201ENST00000375820 HEXDCQ8WVB3 486 aa13.52□□□□□ -0.25
COL4A1-201ENST00000375820 ABCB8Q9NUT2 735 aa13.52□□□□□ -0.25
COL4A1-201ENST00000375820 COPS7AQ9UBW8 275 aa13.52□□□□□ -0.25
COL4A1-201ENST00000375820 RIMKLBQ9ULI2 386 aa13.52□□□□□ -0.25
COL4A1-201ENST00000375820 ARL5CA6NH57 179 aa13.52□□□□□ -0.25
COL4A1-201ENST00000375820 TULP3O75386 442 aa13.52□□□□□ -0.25
COL4A1-201ENST00000375820 SLC35G6P0C7Q6 338 aa13.52□□□□□ -0.25
COL4A1-201ENST00000375820 ECHS1P30084 290 aa13.52□□□□□ -0.25
COL4A1-201ENST00000375820 MSANTD1Q6ZTZ1 278 aa13.52□□□□□ -0.25
COL4A1-201ENST00000375820 TAC4Q86UU9 113 aa13.52□□□□□ -0.25
COL4A1-201ENST00000375820 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.52□□□□□ -0.25
COL4A1-201ENST00000375820 MREGQ8N565 214 aa13.52□□□□□ -0.25
COL4A1-201ENST00000375820 OR2AJ1Q8NGZ0 328 aa13.52□□□□□ -0.25
COL4A1-201ENST00000375820 DQX1Q8TE96 717 aaKnown RBP13.52□□□□□ -0.25
COL4A1-201ENST00000375820 STYXQ8WUJ0 223 aa13.52□□□□□ -0.25
COL4A1-201ENST00000375820 PYCR2Q96C36 320 aa13.52□□□□□ -0.25
COL4A1-201ENST00000375820 KCNC2Q96PR1 638 aa13.52□□□□□ -0.25
COL4A1-201ENST00000375820 OR2AG1Q9H205 316 aa13.52□□□□□ -0.25
COL4A1-201ENST00000375820 EIF3KQ9UBQ5 218 aaKnown RBP13.52□□□□□ -0.25
COL4A1-201ENST00000375820 TRPS1Q9UHF7 1281 aa13.52□□□□□ -0.25
COL4A1-201ENST00000375820 CPQQ9Y646 472 aa13.52□□□□□ -0.25
COL4A1-201ENST00000375820 C5orf51A6NDU8 294 aa13.51□□□□□ -0.25
COL4A1-201ENST00000375820 TTC34A8MYJ7 566 aa13.51□□□□□ -0.25
COL4A1-201ENST00000375820 PAPSS2O95340 614 aaPredicted RBP13.51□□□□□ -0.25
COL4A1-201ENST00000375820 NCBP2P52298 156 aaKnown RBP eCLIP13.51□□□□□ -0.25
COL4A1-201ENST00000375820 HDDC3Q8N4P3 179 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms