RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 ZNF157P51786 506 aaPredicted RBP11.94□□□□□ -0.5
CLIP3-201ENST00000360535 PLA2G16P53816 162 aa11.94□□□□□ -0.5
CLIP3-201ENST00000360535 CBX3Q13185 183 aa11.94□□□□□ -0.5
CLIP3-201ENST00000360535 TAF1AQ15573 450 aaPredicted RBP11.94□□□□□ -0.5
CLIP3-201ENST00000360535 CRY1Q16526 586 aa11.94□□□□□ -0.5
CLIP3-201ENST00000360535 ZNF829Q3KNS6 432 aaPredicted RBP11.94□□□□□ -0.5
CLIP3-201ENST00000360535 FAM117BQ6P1L5 589 aa11.94□□□□□ -0.5
CLIP3-201ENST00000360535 CRTC3Q6UUV7 619 aa11.94□□□□□ -0.5
CLIP3-201ENST00000360535 PRSS55Q6UWB4 352 aaPredicted RBP11.94□□□□□ -0.5
CLIP3-201ENST00000360535 RSPO2Q6UXX9 243 aaPredicted RBP11.94□□□□□ -0.5
CLIP3-201ENST00000360535 DET1Q7L5Y6 550 aa11.94□□□□□ -0.5
CLIP3-201ENST00000360535 SAPCD2Q86UD0 394 aa11.94□□□□□ -0.5
CLIP3-201ENST00000360535 RTN4RL1Q86UN2 441 aaPredicted RBP11.94□□□□□ -0.5
CLIP3-201ENST00000360535 LIX1Q8N485 282 aa11.94□□□□□ -0.5
CLIP3-201ENST00000360535 COX4I2Q96KJ9 171 aa11.94□□□□□ -0.5
CLIP3-201ENST00000360535 CSF3RQ99062 836 aa11.94□□□□□ -0.5
CLIP3-201ENST00000360535 ACTL8Q9H568 366 aa11.94□□□□□ -0.5
CLIP3-201ENST00000360535 TLR9Q9NR96 1032 aa11.94□□□□□ -0.5
CLIP3-201ENST00000360535 BAG5Q9UL15 447 aa11.94□□□□□ -0.5
CLIP3-201ENST00000360535 FCF1Q9Y324 198 aaKnown RBP11.94□□□□□ -0.5
CLIP3-201ENST00000360535 IGLV3-10A0A075B6K4 115 aa11.93□□□□□ -0.5
CLIP3-201ENST00000360535 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP11.93□□□□□ -0.5
CLIP3-201ENST00000360535 TYW5A2RUC4 315 aaKnown RBP11.93□□□□□ -0.5
CLIP3-201ENST00000360535 ANKRD66B4E2M5 251 aa11.93□□□□□ -0.5
CLIP3-201ENST00000360535 CFAP99D6REC4 459 aa11.93□□□□□ -0.5
CLIP3-201ENST00000360535 ZNF682O95780 498 aa11.93□□□□□ -0.5
CLIP3-201ENST00000360535 MBL2P11226 248 aaPredicted RBP11.93□□□□□ -0.5
CLIP3-201ENST00000360535 HOXB8P17481 243 aaPredicted RBP11.93□□□□□ -0.5
CLIP3-201ENST00000360535 MAGEA10P43363 369 aaPredicted RBP11.93□□□□□ -0.5
CLIP3-201ENST00000360535 TTPAP49638 278 aa11.93□□□□□ -0.5
CLIP3-201ENST00000360535 FPGSQ05932 587 aa11.93□□□□□ -0.5
CLIP3-201ENST00000360535 MGAT3Q09327 533 aa11.93□□□□□ -0.5
CLIP3-201ENST00000360535 ZNF177Q13360 481 aaPredicted RBP11.93□□□□□ -0.5
CLIP3-201ENST00000360535 ARHGEF7Q14155 803 aa11.93□□□□□ -0.5
CLIP3-201ENST00000360535 PGS1Q32NB8 556 aa11.93□□□□□ -0.5
CLIP3-201ENST00000360535 PDCD4Q53EL6 469 aaKnown RBP11.93□□□□□ -0.5
CLIP3-201ENST00000360535 ZNF583Q96ND8 569 aa11.93□□□□□ -0.5
CLIP3-201ENST00000360535 ZIM2Q9NZV7 527 aa11.93□□□□□ -0.5
CLIP3-201ENST00000360535 PIKFYVEQ9Y2I7 2098 aa11.93□□□□□ -0.5
CLIP3-201ENST00000360535 FNDC1Q4ZHG4 1894 aaPredicted RBP11.93□□□□□ -0.5
CLIP3-201ENST00000360535 DICER1Q9UPY3 1922 aaKnown RBP11.93□□□□□ -0.5
CLIP3-201ENST00000360535 A0A1W2PQ67 120 aa11.93□□□□□ -0.5
CLIP3-201ENST00000360535 KRT87PA6NCN2 255 aa11.93□□□□□ -0.5
CLIP3-201ENST00000360535 PFDN6O15212 129 aa11.93□□□□□ -0.5
CLIP3-201ENST00000360535 ALPLP05186 524 aa11.93□□□□□ -0.5
CLIP3-201ENST00000360535 FUT4P22083 530 aa11.93□□□□□ -0.5
CLIP3-201ENST00000360535 FMO3P31513 532 aa11.93□□□□□ -0.5
CLIP3-201ENST00000360535 CD300CQ08708 224 aa11.93□□□□□ -0.5
CLIP3-201ENST00000360535 SPCS2Q15005 226 aa11.93□□□□□ -0.5
CLIP3-201ENST00000360535 CYP2A13Q16696 494 aa11.93□□□□□ -0.5
CLIP3-201ENST00000360535 TXNDC11Q6PKC3 985 aa11.93□□□□□ -0.5
CLIP3-201ENST00000360535 EFL1Q7Z2Z2 1120 aaKnown RBP11.93□□□□□ -0.5
CLIP3-201ENST00000360535 CARNMT1Q8N4J0 409 aa11.93□□□□□ -0.5
CLIP3-201ENST00000360535 BPIFB1Q8TDL5 484 aa11.93□□□□□ -0.5
CLIP3-201ENST00000360535 TSSK3Q96PN8 268 aa11.93□□□□□ -0.5
CLIP3-201ENST00000360535 OR52E6Q96RD3 313 aa11.93□□□□□ -0.5
CLIP3-201ENST00000360535 TRIB3Q96RU7 358 aa11.93□□□□□ -0.5
CLIP3-201ENST00000360535 NUSAP1Q9BXS6 441 aaKnown RBP11.93□□□□□ -0.5
CLIP3-201ENST00000360535 BRINP2Q9C0B6 783 aa11.93□□□□□ -0.5
CLIP3-201ENST00000360535 FAM118AQ9NWS6 357 aa11.93□□□□□ -0.5
CLIP3-201ENST00000360535 ZNF510Q9Y2H8 683 aa11.93□□□□□ -0.5
CLIP3-201ENST00000360535 DRGXA6NNA5 263 aa11.93□□□□□ -0.5
CLIP3-201ENST00000360535 UPK1AO00322 258 aa11.93□□□□□ -0.5
CLIP3-201ENST00000360535 OR7A17O14581 309 aa11.93□□□□□ -0.5
CLIP3-201ENST00000360535 STX16O14662 325 aa11.93□□□□□ -0.5
CLIP3-201ENST00000360535 FFAR2O15552 330 aa11.93□□□□□ -0.5
CLIP3-201ENST00000360535 FUCA1P04066 466 aa11.93□□□□□ -0.5
CLIP3-201ENST00000360535 PRR35P0CG20 571 aa11.93□□□□□ -0.5
CLIP3-201ENST00000360535 AKT1P31749 480 aa11.93□□□□□ -0.5
CLIP3-201ENST00000360535 TTKP33981 857 aa11.93□□□□□ -0.5
CLIP3-201ENST00000360535 NEK2P51955 445 aa11.93□□□□□ -0.5
CLIP3-201ENST00000360535 CYP4F3Q08477 520 aa11.93□□□□□ -0.5
CLIP3-201ENST00000360535 CD47Q08722 323 aa11.93□□□□□ -0.5
CLIP3-201ENST00000360535 MAPK11Q15759 364 aa11.93□□□□□ -0.5
CLIP3-201ENST00000360535 TMEM179BQ7Z7N9 219 aa11.93□□□□□ -0.5
CLIP3-201ENST00000360535 SLC13A3Q8WWT9 602 aa11.93□□□□□ -0.5
CLIP3-201ENST00000360535 AMBRA1Q9C0C7 1298 aa11.93□□□□□ -0.5
CLIP3-201ENST00000360535 RAD21L1Q9H4I0 556 aa11.93□□□□□ -0.5
CLIP3-201ENST00000360535 RIBC2Q9H4K1 309 aa11.93□□□□□ -0.5
CLIP3-201ENST00000360535 POPDC3Q9HBV1 291 aa11.93□□□□□ -0.5
CLIP3-201ENST00000360535 HPS4Q9NQG7 708 aa11.93□□□□□ -0.5
CLIP3-201ENST00000360535 PDE10AQ9Y233 779 aa11.93□□□□□ -0.5
CLIP3-201ENST00000360535 SH3GLB1Q9Y371 365 aa11.93□□□□□ -0.5
CLIP3-201ENST00000360535 PTPRDP23468 1912 aa11.92□□□□□ -0.5
CLIP3-201ENST00000360535 LSM1O15116 133 aaKnown RBP11.92□□□□□ -0.5
CLIP3-201ENST00000360535 ACSL4O60488 711 aa11.92□□□□□ -0.5
CLIP3-201ENST00000360535 NBNO60934 754 aa11.92□□□□□ -0.5
CLIP3-201ENST00000360535 EPOP01588 193 aa11.92□□□□□ -0.5
CLIP3-201ENST00000360535 HOXC8P31273 242 aa11.92□□□□□ -0.5
CLIP3-201ENST00000360535 CA5AP35218 305 aa11.92□□□□□ -0.5
CLIP3-201ENST00000360535 PWP1Q13610 501 aa11.92□□□□□ -0.5
CLIP3-201ENST00000360535 CTU2Q2VPK5 515 aaKnown RBP11.92□□□□□ -0.5
CLIP3-201ENST00000360535 DCDC5Q6ZRR9 648 aa11.92□□□□□ -0.5
CLIP3-201ENST00000360535 RBM23Q86U06 439 aaKnown RBP11.92□□□□□ -0.5
CLIP3-201ENST00000360535 SPARTQ8N0X7 666 aa11.92□□□□□ -0.5
CLIP3-201ENST00000360535 OR13F1Q8NGS4 319 aa11.92□□□□□ -0.5
CLIP3-201ENST00000360535 ZNF420Q8TAQ5 688 aaPredicted RBP11.92□□□□□ -0.5
CLIP3-201ENST00000360535 C8orf48Q96LL4 319 aa11.92□□□□□ -0.5
CLIP3-201ENST00000360535 UROC1Q96N76 676 aa11.92□□□□□ -0.5
CLIP3-201ENST00000360535 PSKH2Q96QS6 385 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms