RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 RHDQ02161 417 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 SMAD4Q13485 552 aaKnown RBP2.29□□□□□ -2.04
VPS54-202ENST00000354504 PLCL1Q15111 1095 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 PPP1R7Q15435 360 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 ADRM1Q16186 407 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 PSMD5Q16401 504 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 UNC50Q53HI1 259 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 TAF1BQ53T94 588 aaPredicted RBP2.29□□□□□ -2.04
VPS54-202ENST00000354504 PIGGQ5H8A4 983 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 IRAK1BP1Q5VVH5 260 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 OR52E8Q6IFG1 317 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 LAIR2Q6ISS4 152 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 FUT10Q6P4F1 479 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 DCUN1D2Q6PH85 259 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 SBSNQ6UWP8 590 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 ZYG11AQ6WRX3 759 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 ZCCHC23Q6ZST2 131 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 FRMD7Q6ZUT3 714 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 DET1Q7L5Y6 550 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 TSEN54Q7Z6J9 526 aaKnown RBP2.29□□□□□ -2.04
VPS54-202ENST00000354504 ADIPOR2Q86V24 386 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 MON1AQ86VX9 555 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 MSRB3Q8IXL7 192 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 NUP93Q8N1F7 819 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 HIPK4Q8NE63 616 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 SPPL2BQ8TCT7 592 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 ZNF483Q8TF39 744 aaPredicted RBP2.29□□□□□ -2.04
VPS54-202ENST00000354504 GDPD5Q8WTR4 605 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 PEX13Q92968 403 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 KIAA1191Q96A73 305 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 CELF6Q96J87 481 aaKnown RBP2.29□□□□□ -2.04
VPS54-202ENST00000354504 MCCC1Q96RQ3 725 aaPredicted RBP2.29□□□□□ -2.04
VPS54-202ENST00000354504 CPNE1Q99829 537 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 VRK1Q99986 396 aaPredicted RBP2.29□□□□□ -2.04
VPS54-202ENST00000354504 TCHPQ9BT92 498 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 APOL6Q9BWW8 343 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 TMEM120AQ9BXJ8 343 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 CALN1Q9BXU9 219 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 AICDAQ9GZX7 198 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 DRC3Q9H069 523 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 SLC25A51Q9H1U9 297 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 MFSD1Q9H3U5 465 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 MANSC1Q9H8J5 431 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 PRDM8Q9NQV8 689 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 ACSS2Q9NR19 701 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 INTS9Q9NV88 658 aaKnown RBP2.29□□□□□ -2.04
VPS54-202ENST00000354504 NLE1Q9NVX2 485 aaPredicted RBP2.29□□□□□ -2.04
VPS54-202ENST00000354504 USP36Q9P275 1121 aaKnown RBP2.29□□□□□ -2.04
VPS54-202ENST00000354504 ZNF639Q9UID6 485 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 RIMS3Q9UJD0 308 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 NUDT5Q9UKK9 219 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 CNOT6Q9ULM6 557 aaKnown RBP2.29□□□□□ -2.04
VPS54-202ENST00000354504 ARL2BPQ9Y2Y0 163 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 VWA7Q9Y334 891 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 HEY1Q9Y5J3 304 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 UBA6A0AVT1 1052 aaPredicted RBP2.29□□□□□ -2.04
VPS54-202ENST00000354504 OR51F1A6NGY5 319 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 ERI2A8K979 691 aaKnown RBP2.29□□□□□ -2.04
VPS54-202ENST00000354504 GOLGA8RI6L899 631 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 EEF2KO00418 725 aaKnown RBP2.29□□□□□ -2.04
VPS54-202ENST00000354504 E2F3O00716 465 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 OR7A17O14581 309 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 NCAM2O15394 837 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 SMAD6O43541 496 aaKnown RBP2.29□□□□□ -2.04
VPS54-202ENST00000354504 HUS1O60921 280 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 CYP17A1P05093 508 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 APRTP07741 180 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 RPS17P08708 135 aaKnown RBP2.29□□□□□ -2.04
VPS54-202ENST00000354504 SMIM18P0DKX4 95 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 P4HA1P13674 534 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 GPX3P22352 226 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 EPHB2P29323 1055 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 PRDX3P30048 256 aaKnown RBP2.29□□□□□ -2.04
VPS54-202ENST00000354504 CDC25CP30307 473 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 VIPR1P32241 457 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 ABCG1P45844 678 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 SLC7A9P82251 487 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 MS4A2Q01362 244 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 DEUP1Q05D60 604 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 IL10RBQ08334 325 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 OVGP1Q12889 678 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 TRAF2Q12933 501 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 RALGDSQ12967 914 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 NOGQ13253 232 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 TFDP2Q14188 446 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 SLC9A5Q14940 896 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 TBR1Q16650 682 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 HADHQ16836 314 aaKnown RBP2.29□□□□□ -2.04
VPS54-202ENST00000354504 DGKKQ5KSL6 1271 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 GRTP1Q5TC63 336 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 TWF2Q6IBS0 349 aaKnown RBP2.29□□□□□ -2.04
VPS54-202ENST00000354504 UGT3A1Q6NUS8 523 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 HTR3DQ70Z44 454 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 RSPH3Q86UC2 560 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 PIM3Q86V86 326 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 CCDC50Q8IVM0 306 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 CDKL3Q8IVW4 592 aaPredicted RBP2.29□□□□□ -2.04
VPS54-202ENST00000354504 TMEM151BQ8IW70 566 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 FSTL5Q8N475 847 aaPredicted RBP2.29□□□□□ -2.04
VPS54-202ENST00000354504 MAB21L3Q8N8X9 362 aa2.29□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms