RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 PRSS58Q8IYP2 241 aa14.67□□□□□ -0.06
COL17A1-201ENST00000353479 RAB11FIP5Q9BXF6 653 aa14.67□□□□□ -0.06
COL17A1-201ENST00000353479 KLHL1Q9NR64 748 aa14.67□□□□□ -0.06
COL17A1-201ENST00000353479 PPIEQ9UNP9 301 aaKnown RBP14.67□□□□□ -0.06
COL17A1-201ENST00000353479 C15orf41Q9Y2V0 281 aa14.67□□□□□ -0.06
COL17A1-201ENST00000353479 TMEM98Q9Y2Y6 226 aa14.67□□□□□ -0.06
COL17A1-201ENST00000353479 MYH7P12883 1935 aa14.66□□□□□ -0.06
COL17A1-201ENST00000353479 TIAM2Q8IVF5 1701 aa14.66□□□□□ -0.06
COL17A1-201ENST00000353479 ARHGEF9O43307 516 aa14.66□□□□□ -0.06
COL17A1-201ENST00000353479 IL6P05231 212 aa14.66□□□□□ -0.06
COL17A1-201ENST00000353479 RPL10P27635 214 aaKnown RBP14.66□□□□□ -0.06
COL17A1-201ENST00000353479 UGT2B15P54855 530 aa14.66□□□□□ -0.06
COL17A1-201ENST00000353479 HERVK_113P63132 956 aa14.66□□□□□ -0.06
COL17A1-201ENST00000353479 TTC9BQ8N6N2 239 aa14.66□□□□□ -0.06
COL17A1-201ENST00000353479 LENG8Q96PV6 779 aaPredicted RBP14.66□□□□□ -0.06
COL17A1-201ENST00000353479 ERVK-6Q9BXR3 956 aa14.66□□□□□ -0.06
COL17A1-201ENST00000353479 C1orf109Q9NX04 203 aa14.66□□□□□ -0.06
COL17A1-201ENST00000353479 NHSQ6T4R5 1651 aa14.66□□□□□ -0.06
COL17A1-201ENST00000353479 PRR23D1E9PI22 279 aaPredicted RBP14.66□□□□□ -0.06
COL17A1-201ENST00000353479 HAS3O00219 553 aa14.66□□□□□ -0.06
COL17A1-201ENST00000353479 POP7O75817 140 aaKnown RBP14.66□□□□□ -0.06
COL17A1-201ENST00000353479 PRR23D2P0DMB1 279 aaPredicted RBP14.66□□□□□ -0.06
COL17A1-201ENST00000353479 ZC3HC1Q86WB0 502 aaKnown RBP14.66□□□□□ -0.06
COL17A1-201ENST00000353479 HPS6Q86YV9 775 aa14.66□□□□□ -0.06
COL17A1-201ENST00000353479 ANKRD49Q8WVL7 239 aa14.66□□□□□ -0.06
COL17A1-201ENST00000353479 C3orf18Q9UK00 162 aa14.66□□□□□ -0.06
COL17A1-201ENST00000353479 COQ6Q9Y2Z9 468 aa14.66□□□□□ -0.06
COL17A1-201ENST00000353479 PDE4DIPQ5VU43 2346 aa14.66□□□□□ -0.06
COL17A1-201ENST00000353479 CA3P07451 260 aa14.66□□□□□ -0.06
COL17A1-201ENST00000353479 USP46P62068 366 aa14.66□□□□□ -0.06
COL17A1-201ENST00000353479 REP15Q6BDI9 236 aa14.66□□□□□ -0.06
COL17A1-201ENST00000353479 SPPL2CQ8IUH8 684 aa14.66□□□□□ -0.06
COL17A1-201ENST00000353479 TERB1Q8NA31 727 aa14.66□□□□□ -0.06
COL17A1-201ENST00000353479 RBM15BQ8NDT2 890 aaKnown RBP14.66□□□□□ -0.06
COL17A1-201ENST00000353479 WDR36Q8NI36 951 aaKnown RBP14.66□□□□□ -0.06
COL17A1-201ENST00000353479 MIPEPQ99797 713 aa14.66□□□□□ -0.06
COL17A1-201ENST00000353479 P2RY13Q9BPV8 354 aa14.66□□□□□ -0.06
COL17A1-201ENST00000353479 SEC14L3Q9UDX4 400 aa14.66□□□□□ -0.06
COL17A1-201ENST00000353479 PCDHGB3Q9Y5G1 929 aa14.66□□□□□ -0.06
COL17A1-201ENST00000353479 TAF1P21675 1872 aa14.66□□□□□ -0.06
COL17A1-201ENST00000353479 LEFTY1O75610 366 aa14.66□□□□□ -0.06
COL17A1-201ENST00000353479 TSPAN19P0C672 248 aa14.66□□□□□ -0.06
COL17A1-201ENST00000353479 C1QTNF8P60827 252 aa14.66□□□□□ -0.06
COL17A1-201ENST00000353479 CLDN10P78369 228 aa14.66□□□□□ -0.06
COL17A1-201ENST00000353479 TCEAL1Q15170 157 aa14.66□□□□□ -0.06
COL17A1-201ENST00000353479 GLYATQ6IB77 296 aa14.66□□□□□ -0.06
COL17A1-201ENST00000353479 ZSCAN2Q7Z7L9 614 aaPredicted RBP14.66□□□□□ -0.06
COL17A1-201ENST00000353479 LRRTM3Q86VH5 581 aa14.66□□□□□ -0.06
COL17A1-201ENST00000353479 BPIFB6Q8NFQ5 453 aa14.66□□□□□ -0.06
COL17A1-201ENST00000353479 ANKRD27Q96NW4 1050 aa14.66□□□□□ -0.06
COL17A1-201ENST00000353479 SGIP1Q9BQI5 828 aa14.66□□□□□ -0.06
COL17A1-201ENST00000353479 NUSAP1Q9BXS6 441 aaKnown RBP14.66□□□□□ -0.06
COL17A1-201ENST00000353479 MRTO4Q9UKD2 239 aaKnown RBP14.66□□□□□ -0.06
COL17A1-201ENST00000353479 IKZF3Q9UKT9 509 aa14.66□□□□□ -0.06
COL17A1-201ENST00000353479 ATXN2Q99700 1313 aaKnown RBP14.66□□□□□ -0.06
COL17A1-201ENST00000353479 TNFP01375 233 aa14.65□□□□□ -0.06
COL17A1-201ENST00000353479 CYP11A1P05108 521 aa14.65□□□□□ -0.06
COL17A1-201ENST00000353479 PTDSS1P48651 473 aaKnown RBP14.65□□□□□ -0.06
COL17A1-201ENST00000353479 TAF13Q15543 124 aa14.65□□□□□ -0.06
COL17A1-201ENST00000353479 TTC23Q5W5X9 447 aa14.65□□□□□ -0.06
COL17A1-201ENST00000353479 CLPTM1LQ96KA5 538 aa14.65□□□□□ -0.06
COL17A1-201ENST00000353479 ELOVL2Q9NXB9 296 aa14.65□□□□□ -0.06
COL17A1-201ENST00000353479 PRKAB1Q9Y478 270 aa14.65□□□□□ -0.06
COL17A1-201ENST00000353479 MYH11P35749 1972 aa14.65□□□□□ -0.06
COL17A1-201ENST00000353479 HEPACAM2A8MVW5 462 aa14.65□□□□□ -0.06
COL17A1-201ENST00000353479 M0QZQ0 153 aa14.65□□□□□ -0.06
COL17A1-201ENST00000353479 IMPDH1P20839 514 aa14.65□□□□□ -0.06
COL17A1-201ENST00000353479 ALDH4A1P30038 563 aa14.65□□□□□ -0.06
COL17A1-201ENST00000353479 MYH14Q7Z406 1995 aaKnown RBP14.65□□□□□ -0.06
COL17A1-201ENST00000353479 SCAIQ8N9R8 606 aa14.65□□□□□ -0.06
COL17A1-201ENST00000353479 ZNF563Q8TA94 476 aa14.65□□□□□ -0.06
COL17A1-201ENST00000353479 U3KQV3 271 aa14.65□□□□□ -0.06
COL17A1-201ENST00000353479 ZNF487B1APH4 448 aa14.65□□□□□ -0.06
COL17A1-201ENST00000353479 GMFGO60234 142 aa14.65□□□□□ -0.06
COL17A1-201ENST00000353479 EDN1P05305 212 aa14.65□□□□□ -0.06
COL17A1-201ENST00000353479 BMP7P18075 431 aa14.65□□□□□ -0.06
COL17A1-201ENST00000353479 BDKRB1P46663 353 aa14.65□□□□□ -0.06
COL17A1-201ENST00000353479 MAPK10P53779 464 aa14.65□□□□□ -0.06
COL17A1-201ENST00000353479 FAM46DQ8NEK8 389 aa14.65□□□□□ -0.06
COL17A1-201ENST00000353479 SAMD4AQ9UPU9 718 aaKnown RBP14.65□□□□□ -0.06
COL17A1-201ENST00000353479 A0A0G2JN53 185 aa14.65□□□□□ -0.06
COL17A1-201ENST00000353479 NFKB2Q00653 900 aa14.65□□□□□ -0.06
COL17A1-201ENST00000353479 CYP4F3Q08477 520 aa14.65□□□□□ -0.06
COL17A1-201ENST00000353479 GCNT6Q5T4J0 391 aa14.65□□□□□ -0.06
COL17A1-201ENST00000353479 CDC73Q6P1J9 531 aa14.65□□□□□ -0.06
COL17A1-201ENST00000353479 RINLQ6ZS11 566 aa14.65□□□□□ -0.06
COL17A1-201ENST00000353479 EEF1AKMT1Q8WVE0 214 aa14.65□□□□□ -0.06
COL17A1-201ENST00000353479 GSC2O15499 205 aa14.65□□□□□ -0.06
COL17A1-201ENST00000353479 MATN4O95460 622 aa14.65□□□□□ -0.06
COL17A1-201ENST00000353479 KLF8O95600 359 aaPredicted RBP14.65□□□□□ -0.06
COL17A1-201ENST00000353479 CTSAP10619 480 aa14.65□□□□□ -0.06
COL17A1-201ENST00000353479 PRPS2P11908 318 aa14.65□□□□□ -0.06
COL17A1-201ENST00000353479 PTSQ03393 145 aa14.65□□□□□ -0.06
COL17A1-201ENST00000353479 RAB33AQ14088 237 aa14.65□□□□□ -0.06
COL17A1-201ENST00000353479 FGD2Q7Z6J4 655 aa14.65□□□□□ -0.06
COL17A1-201ENST00000353479 FITM2Q8N6M3 262 aa14.65□□□□□ -0.06
COL17A1-201ENST00000353479 RBM18Q96H35 190 aaKnown RBP14.65□□□□□ -0.06
COL17A1-201ENST00000353479 TDRD1Q9BXT4 1180 aaKnown RBP14.65□□□□□ -0.06
COL17A1-201ENST00000353479 DGCR6LQ9BY27 220 aa14.65□□□□□ -0.06
COL17A1-201ENST00000353479 MAGEA10P43363 369 aaPredicted RBP14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms