RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 DECR1Q16698 335 aa8.27□□□□□ -1.09
HMGB1-203ENST00000341423 TUBB8Q3ZCM7 444 aa8.27□□□□□ -1.09
HMGB1-203ENST00000341423 GPAT3Q53EU6 434 aa8.27□□□□□ -1.09
HMGB1-203ENST00000341423 PRUNE1Q86TP1 453 aa8.27□□□□□ -1.09
HMGB1-203ENST00000341423 DTX3Q8N9I9 347 aa8.27□□□□□ -1.09
HMGB1-203ENST00000341423 HM13Q8TCT9 377 aa8.27□□□□□ -1.09
HMGB1-203ENST00000341423 HSPBAP1Q96EW2 488 aa8.27□□□□□ -1.09
HMGB1-203ENST00000341423 FEM1AQ9BSK4 669 aa8.27□□□□□ -1.09
HMGB1-203ENST00000341423 APOOQ9BUR5 198 aa8.27□□□□□ -1.09
HMGB1-203ENST00000341423 CEP44Q9C0F1 390 aa8.27□□□□□ -1.09
HMGB1-203ENST00000341423 ENDOUP21128 410 aaKnown RBP8.27□□□□□ -1.09
HMGB1-203ENST00000341423 CCND1P24385 295 aa8.27□□□□□ -1.09
HMGB1-203ENST00000341423 HRH2P25021 359 aa8.27□□□□□ -1.09
HMGB1-203ENST00000341423 S100GP29377 79 aa8.27□□□□□ -1.09
HMGB1-203ENST00000341423 SLC25A52Q3SY17 297 aa8.27□□□□□ -1.09
HMGB1-203ENST00000341423 STXBP5Q5T5C0 1151 aa8.27□□□□□ -1.09
HMGB1-203ENST00000341423 TCAIMQ8N3R3 496 aa8.27□□□□□ -1.09
HMGB1-203ENST00000341423 SELENOMQ8WWX9 145 aa8.27□□□□□ -1.09
HMGB1-203ENST00000341423 BCL2L14Q9BZR8 327 aa8.27□□□□□ -1.09
HMGB1-203ENST00000341423 OPA3Q9H6K4 179 aa8.27□□□□□ -1.09
HMGB1-203ENST00000341423 B4GALT6Q9UBX8 382 aa8.27□□□□□ -1.09
HMGB1-203ENST00000341423 DNAJC25-GNG10A0A024R161 153 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 LINGO3P0C6S8 592 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 RHOXF2BP0C7M4 288 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 RRM2P31350 389 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 TAF5Q15542 800 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 UPP1Q16831 310 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 DEPDC1Q5TB30 811 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 RESP18Q5W5W9 173 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 CREB3L4Q8TEY5 395 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 VRK1Q99986 396 aaPredicted RBP8.26□□□□□ -1.09
HMGB1-203ENST00000341423 RHOXF2Q9BQY4 288 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 TRIM4Q9C037 500 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 HSFX1Q9UBD0 423 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 CACNG4Q9UBN1 327 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 FZD4Q9ULV1 537 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 FARSAQ9Y285 508 aaKnown RBP8.26□□□□□ -1.09
HMGB1-203ENST00000341423 KCTD3Q9Y597 815 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 ACACAQ13085 2346 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 FAM205CA6NFA0 338 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 HAS3O00219 553 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 CHUKO15111 745 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 KIF1CO43896 1103 aaKnown RBP8.26□□□□□ -1.09
HMGB1-203ENST00000341423 FTCDO95954 541 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 GSRP00390 522 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 LPLP06858 475 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 ADRB3P13945 408 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 CLCN4P51793 760 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 ACTR3P61158 418 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 ESRRGP62508 458 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 DCDP81605 110 aaKnown RBP8.26□□□□□ -1.09
HMGB1-203ENST00000341423 DR1Q01658 176 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 TBL3Q12788 808 aaKnown RBP8.26□□□□□ -1.09
HMGB1-203ENST00000341423 GALNT18Q6P9A2 607 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 RFX8Q6ZV50 586 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 CIR1Q86X95 450 aaPredicted RBP8.26□□□□□ -1.09
HMGB1-203ENST00000341423 RP9Q8TA86 221 aaKnown RBP8.26□□□□□ -1.09
HMGB1-203ENST00000341423 HTR3CQ8WXA8 447 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 CLCC1Q96S66 551 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 KCNK16Q96T55 309 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 KLHL4Q9C0H6 718 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 YY1AP1Q9H869 796 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 KRT84Q9NSB2 600 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 RNF215Q9Y6U7 377 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 BCLAF3A2AJT9 711 aaKnown RBP8.26□□□□□ -1.09
HMGB1-203ENST00000341423 SPAG6O75602 509 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 RNH1P13489 461 aaKnown RBP8.26□□□□□ -1.09
HMGB1-203ENST00000341423 PAICSP22234 425 aaKnown RBP8.26□□□□□ -1.09
HMGB1-203ENST00000341423 L1CAMP32004 1257 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 ADRA1BP35368 520 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 IFNGR2P38484 337 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 CDK7P50613 346 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 CACNG1Q06432 222 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 FUT11Q495W5 492 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 RASSF6Q6ZTQ3 369 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 MRPL10Q7Z7H8 261 aaKnown RBP8.26□□□□□ -1.09
HMGB1-203ENST00000341423 WDR5BQ86VZ2 330 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 DENND6BQ8NEG7 585 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 ZC3HAV1LQ96H79 300 aaKnown RBP8.26□□□□□ -1.09
HMGB1-203ENST00000341423 NSMCE3Q96MG7 304 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 NAA11Q9BSU3 229 aaPredicted RBP8.26□□□□□ -1.09
HMGB1-203ENST00000341423 SLC46A2Q9BY10 475 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 MAT2BQ9NZL9 334 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 KLF13Q9Y2Y9 288 aaPredicted RBP8.26□□□□□ -1.09
HMGB1-203ENST00000341423 FAM171A2A8MVW0 826 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 ZBTB39O15060 712 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 OAZ2O95190 189 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 MYL2P10916 166 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 ANPEPP15144 967 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 ERCC2P18074 760 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 EEF1B2P24534 225 aaKnown RBP8.26□□□□□ -1.09
HMGB1-203ENST00000341423 TPMTP51580 245 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 DNASE1L3Q13609 305 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 VEZF1Q14119 521 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 CHRNA6Q15825 494 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 KCTD8Q6ZWB6 473 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 TAC4Q86UU9 113 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 AGGF1Q8N302 714 aaeCLIP8.26□□□□□ -1.094e-7■■■■□ 25.1
HMGB1-203ENST00000341423 CADM4Q8NFZ8 388 aa8.26□□□□□ -1.09
HMGB1-203ENST00000341423 DTX3LQ8TDB6 740 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms