RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 FAM174BQ3ZCQ3 159 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 ANO7Q6IWH7 933 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 CYP2U1Q7Z449 544 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 SLC4A9Q96Q91 983 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 SYNDIG1Q9H7V2 258 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 POLR1DQ9Y2S0 133 aa10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 TDRKHQ9Y2W6 561 aaKnown RBP10.15□□□□□ -0.78
CCDC88A-202ENST00000336838 NUP214P35658 2090 aaPredicted RBP10.15□□□□□ -0.79
CCDC88A-202ENST00000336838 PLOD3O60568 738 aa10.15□□□□□ -0.79
CCDC88A-202ENST00000336838 GALNT1Q10472 559 aaPredicted RBP10.15□□□□□ -0.79
CCDC88A-202ENST00000336838 KCNC3Q14003 757 aa10.15□□□□□ -0.79
CCDC88A-202ENST00000336838 ALFQ53S48 1182 aa10.15□□□□□ -0.79
CCDC88A-202ENST00000336838 PIK3R6Q5UE93 754 aa10.15□□□□□ -0.79
CCDC88A-202ENST00000336838 RAP1GAP2Q684P5 730 aa10.15□□□□□ -0.79
CCDC88A-202ENST00000336838 ZC3HC1Q86WB0 502 aaKnown RBP10.15□□□□□ -0.79
CCDC88A-202ENST00000336838 SUSD6Q92537 303 aa10.15□□□□□ -0.79
CCDC88A-202ENST00000336838 NEUROD4Q9HD90 331 aa10.15□□□□□ -0.79
CCDC88A-202ENST00000336838 GTF2A1LQ9UNN4 478 aa10.15□□□□□ -0.79
CCDC88A-202ENST00000336838 NRAPQ86VF7 1730 aa10.15□□□□□ -0.79
CCDC88A-202ENST00000336838 A0A0X1KG70 313 aa10.15□□□□□ -0.79
CCDC88A-202ENST00000336838 ARPC2O15144 300 aa10.15□□□□□ -0.79
CCDC88A-202ENST00000336838 SLC28A2O43868 658 aa10.15□□□□□ -0.79
CCDC88A-202ENST00000336838 SLC6A4P31645 630 aa10.15□□□□□ -0.79
CCDC88A-202ENST00000336838 GPAT3Q53EU6 434 aa10.15□□□□□ -0.79
CCDC88A-202ENST00000336838 NOL9Q5SY16 702 aaKnown RBP10.15□□□□□ -0.79
CCDC88A-202ENST00000336838 SNX20Q7Z614 316 aa10.15□□□□□ -0.79
CCDC88A-202ENST00000336838 ZDHHC21Q8IVQ6 265 aa10.15□□□□□ -0.79
CCDC88A-202ENST00000336838 SLC34A3Q8N130 599 aa10.15□□□□□ -0.79
CCDC88A-202ENST00000336838 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.15□□□□□ -0.79
CCDC88A-202ENST00000336838 ZNF248Q8NDW4 579 aa10.15□□□□□ -0.79
CCDC88A-202ENST00000336838 SLC45A1Q9Y2W3 748 aa10.15□□□□□ -0.79
CCDC88A-202ENST00000336838 RASAL1O95294 804 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 TXNL4AP83876 142 aaKnown RBP10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 GNA12Q03113 381 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 CBX2Q14781 532 aaPredicted RBP10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 PHYKPLQ8IUZ5 450 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 RHEBL1Q8TAI7 183 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 PLEKHO2Q8TD55 490 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 TMEM138Q9NPI0 162 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 OGDHLQ9ULD0 1010 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 RAI2Q9Y5P3 530 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 ATP6AP2A0A1C7CYW4 349 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 LGR5O75473 907 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 ATP6AP2O75787 350 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 EOMESO95936 686 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 ABL2P42684 1182 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 E2F2Q14209 437 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 DLG2Q15700 870 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 TCEAL5Q5H9L2 206 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 OR2T5Q6IEZ7 315 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 MED27Q6P2C8 311 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 DEF8Q6ZN54 512 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 CAMKK1Q8N5S9 505 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 TRPV3Q8NET8 790 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 OR2T29Q8NH02 315 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 PCDHB9Q9Y5E1 797 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 ST14Q9Y5Y6 855 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 LCHNA4D1U4 455 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 UGT2B4P06133 528 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 YES1P07947 543 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 MAP2K5Q13163 448 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 MSANTD2Q6P1R3 559 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 PGBD3Q8N328 593 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 FLRT1Q9NZU1 646 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 ATAD5Q96QE3 1844 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 CCDC88CQ9P219 2028 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 C9P02748 559 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 NADK2Q4G0N4 442 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 PAN2Q504Q3 1202 aaKnown RBP10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 DENND1CQ8IV53 801 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 CCDC107Q8WV48 283 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 MAGIXQ9H6Y5 334 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 MED11Q9P086 117 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 CARD8Q9Y2G2 431 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 UPP2O95045 317 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 CYP4B1P13584 511 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 ADCYAP1R1P41586 468 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 RPIAP49247 311 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 ATP6AP1Q15904 470 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 BAIAP2L2Q6UXY1 529 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 MSANTD1Q6ZTZ1 278 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 CRYBG2Q8N1P7 616 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 ELMO3Q96BJ8 720 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 MAPKAP1Q9BPZ7 522 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 THOP1P52888 689 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 TIGD6Q17RP2 521 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 FAM110CQ1W6H9 321 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 ACDQ96AP0 544 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 KCTD7Q96MP8 289 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 COLEC10Q9Y6Z7 277 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 FAM155BO75949 473 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 TMEM63AO94886 807 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 PRAMEF1O95521 474 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 METTL18O95568 372 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 PGK1P00558 417 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 HMGN1P05114 100 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 OMPP47874 163 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 IKBKEQ14164 716 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 LBX2Q6XYB7 198 aa10.14□□□□□ -0.79
CCDC88A-202ENST00000336838 C11orf74Q86VG3 221 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms