RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 DNALI1O14645 258 aaPredicted RBP15.43■□□□□ 0.06
CLN3-201ENST00000333496 CAPN5O15484 640 aaPredicted RBP15.43■□□□□ 0.06
CLN3-201ENST00000333496 RRP8O43159 456 aaKnown RBP15.43■□□□□ 0.06
CLN3-201ENST00000333496 PRAMEF10O60809 474 aa15.43■□□□□ 0.06
CLN3-201ENST00000333496 FTH1P02794 183 aa15.43■□□□□ 0.06
CLN3-201ENST00000333496 OR56A5P0C7T3 313 aa15.43■□□□□ 0.06
CLN3-201ENST00000333496 CSTF2P33240 577 aaKnown RBP eCLIP15.43■□□□□ 0.06
CLN3-201ENST00000333496 LEPRP48357 1165 aaKnown RBP15.43■□□□□ 0.06
CLN3-201ENST00000333496 PPP1CAP62136 330 aa15.43■□□□□ 0.06
CLN3-201ENST00000333496 RPA4Q13156 261 aa15.43■□□□□ 0.06
CLN3-201ENST00000333496 BRD3Q15059 726 aa15.43■□□□□ 0.06
CLN3-201ENST00000333496 JAMLQ86YT9 394 aa15.43■□□□□ 0.06
CLN3-201ENST00000333496 SPACA3Q8IXA5 215 aa15.43■□□□□ 0.06
CLN3-201ENST00000333496 KLHL7Q8IXQ5 586 aa15.43■□□□□ 0.06
CLN3-201ENST00000333496 PPIL6Q8IXY8 311 aa15.43■□□□□ 0.06
CLN3-201ENST00000333496 LKAAEAR1Q8TD35 194 aa15.43■□□□□ 0.06
CLN3-201ENST00000333496 ELMO1Q92556 727 aa15.43■□□□□ 0.06
CLN3-201ENST00000333496 CRELD1Q96HD1 420 aa15.43■□□□□ 0.06
CLN3-201ENST00000333496 SIGLEC10Q96LC7 697 aa15.43■□□□□ 0.06
CLN3-201ENST00000333496 C9orf72Q96LT7 481 aa15.43■□□□□ 0.06
CLN3-201ENST00000333496 RAB33BQ9H082 229 aa15.43■□□□□ 0.06
CLN3-201ENST00000333496 KIR3DX1Q9H7L2 352 aa15.43■□□□□ 0.06
CLN3-201ENST00000333496 XAB2Q9HCS7 855 aaKnown RBP15.43■□□□□ 0.06
CLN3-201ENST00000333496 FOXJ2Q9P0K8 574 aa15.43■□□□□ 0.06
CLN3-201ENST00000333496 AKAP7Q9P0M2 348 aaPredicted RBP15.43■□□□□ 0.06
CLN3-201ENST00000333496 SLC24A2Q9UI40 661 aa15.43■□□□□ 0.06
CLN3-201ENST00000333496 ACSL6Q9UKU0 697 aa15.43■□□□□ 0.06
CLN3-201ENST00000333496 PTPRQQ9UMZ3 2332 aa15.43■□□□□ 0.06
CLN3-201ENST00000333496 ITPR1Q14643 2758 aa15.43■□□□□ 0.06
CLN3-201ENST00000333496 SLC5A10A0PJK1 596 aa15.43■□□□□ 0.06
CLN3-201ENST00000333496 SDR42E2A6NKP2 422 aa15.43■□□□□ 0.06
CLN3-201ENST00000333496 IQCF5A8MTL0 148 aa15.43■□□□□ 0.06
CLN3-201ENST00000333496 LIN7AO14910 233 aaPredicted RBP15.43■□□□□ 0.06
CLN3-201ENST00000333496 KIF1CO43896 1103 aaKnown RBP15.43■□□□□ 0.06
CLN3-201ENST00000333496 CD151P48509 253 aa15.43■□□□□ 0.06
CLN3-201ENST00000333496 TTPAP49638 278 aa15.43■□□□□ 0.06
CLN3-201ENST00000333496 COL28A1Q2UY09 1125 aa15.43■□□□□ 0.06
CLN3-201ENST00000333496 AARS2Q5JTZ9 985 aaKnown RBP15.43■□□□□ 0.06
CLN3-201ENST00000333496 ARMC3Q5W041 872 aa15.43■□□□□ 0.06
CLN3-201ENST00000333496 KIAA0930Q6ICG6 404 aaPredicted RBP15.43■□□□□ 0.06
CLN3-201ENST00000333496 CASC4Q6P4E1 433 aa15.43■□□□□ 0.06
CLN3-201ENST00000333496 LRRC69Q6ZNQ3 347 aa15.43■□□□□ 0.06
CLN3-201ENST00000333496 TMEM135Q86UB9 458 aa15.43■□□□□ 0.06
CLN3-201ENST00000333496 PHC3Q8NDX5 983 aa15.43■□□□□ 0.06
CLN3-201ENST00000333496 ZFPM2Q8WW38 1151 aa15.43■□□□□ 0.06
CLN3-201ENST00000333496 TGM7Q96PF1 710 aa15.43■□□□□ 0.06
CLN3-201ENST00000333496 NRTNQ99748 197 aa15.43■□□□□ 0.06
CLN3-201ENST00000333496 P2RY12Q9H244 342 aa15.43■□□□□ 0.06
CLN3-201ENST00000333496 IL1RAPL1Q9NZN1 696 aa15.43■□□□□ 0.06
CLN3-201ENST00000333496 EPHA6Q9UF33 1036 aa15.43■□□□□ 0.06
CLN3-201ENST00000333496 ASIC3Q9UHC3 531 aa15.43■□□□□ 0.06
CLN3-201ENST00000333496 SNRNP200O75643 2136 aaKnown RBP15.42■□□□□ 0.06
CLN3-201ENST00000333496 FAM237BA0A1B0GVD1 139 aa15.42■□□□□ 0.06
CLN3-201ENST00000333496 EFCAB7A8K855 629 aa15.42■□□□□ 0.06
CLN3-201ENST00000333496 PRMT5O14744 637 aaPredicted RBP15.42■□□□□ 0.06
CLN3-201ENST00000333496 ANKRD34CP0C6C1 535 aa15.42■□□□□ 0.06
CLN3-201ENST00000333496 ACADLP28330 430 aa15.42■□□□□ 0.06
CLN3-201ENST00000333496 CCR7P32248 378 aa15.42■□□□□ 0.06
CLN3-201ENST00000333496 PPARGP37231 505 aaPredicted RBP15.42■□□□□ 0.06
CLN3-201ENST00000333496 ABCG1P45844 678 aa15.42■□□□□ 0.06
CLN3-201ENST00000333496 TLE3Q04726 772 aa15.42■□□□□ 0.06
CLN3-201ENST00000333496 TUBB2AQ13885 445 aa15.42■□□□□ 0.06
CLN3-201ENST00000333496 PLCL1Q15111 1095 aa15.42■□□□□ 0.06
CLN3-201ENST00000333496 ANKRD20A4Q4UJ75 823 aa15.42■□□□□ 0.06
CLN3-201ENST00000333496 KCNE4Q8WWG9 221 aa15.42■□□□□ 0.06
CLN3-201ENST00000333496 ART4Q93070 314 aa15.42■□□□□ 0.06
CLN3-201ENST00000333496 FERD3LQ96RJ6 166 aa15.42■□□□□ 0.06
CLN3-201ENST00000333496 TUBB2BQ9BVA1 445 aa15.42■□□□□ 0.06
CLN3-201ENST00000333496 CARD6Q9BX69 1037 aa15.42■□□□□ 0.06
CLN3-201ENST00000333496 CDYLQ9Y232 598 aa15.42■□□□□ 0.06
CLN3-201ENST00000333496 SSUH2Q9Y2M2 353 aa15.42■□□□□ 0.06
CLN3-201ENST00000333496 MRFAP1Q9Y605 127 aa15.42■□□□□ 0.06
CLN3-201ENST00000333496 COLEC10Q9Y6Z7 277 aa15.42■□□□□ 0.06
CLN3-201ENST00000333496 MGAQ8IWI9 3026 aa15.42■□□□□ 0.06
CLN3-201ENST00000333496 ZCWPW2A0A1B0GU75 182 aa15.41■□□□□ 0.06
CLN3-201ENST00000333496 BHMG1C9JSJ3 638 aaPredicted RBP15.41■□□□□ 0.06
CLN3-201ENST00000333496 CCDC188H7C350 402 aa15.41■□□□□ 0.06
CLN3-201ENST00000333496 ITGB6P18564 788 aa15.41■□□□□ 0.06
CLN3-201ENST00000333496 PAFAH1B1P43034 410 aa15.41■□□□□ 0.06
CLN3-201ENST00000333496 BOP1Q14137 746 aaKnown RBP15.41■□□□□ 0.06
CLN3-201ENST00000333496 TYSND1Q2T9J0 566 aa15.41■□□□□ 0.06
CLN3-201ENST00000333496 FAM92BQ6ZTR7 304 aa15.41■□□□□ 0.06
CLN3-201ENST00000333496 PDZD3Q86UT5 571 aa15.41■□□□□ 0.06
CLN3-201ENST00000333496 FAM129CQ86XR2 697 aa15.41■□□□□ 0.06
CLN3-201ENST00000333496 KRT222Q8N1A0 295 aa15.41■□□□□ 0.06
CLN3-201ENST00000333496 TFGQ92734 400 aaPredicted RBP15.41■□□□□ 0.06
CLN3-201ENST00000333496 ZNF669Q96BR6 464 aaPredicted RBP15.41■□□□□ 0.06
CLN3-201ENST00000333496 TAAR9Q96RI9 348 aa15.41■□□□□ 0.06
CLN3-201ENST00000333496 B3GNT4Q9C0J1 378 aa15.41■□□□□ 0.06
CLN3-201ENST00000333496 SAMD15Q9P1V8 674 aa15.41■□□□□ 0.06
CLN3-201ENST00000333496 RNF14Q9UBS8 474 aa15.41■□□□□ 0.06
CLN3-201ENST00000333496 HEBP2Q9Y5Z4 205 aa15.41■□□□□ 0.06
CLN3-201ENST00000333496 B3GALT1Q9Y5Z6 326 aa15.41■□□□□ 0.06
CLN3-201ENST00000333496 RPS6KL1Q9Y6S9 549 aa15.41■□□□□ 0.06
CLN3-201ENST00000333496 MAGEB16A2A368 324 aa15.4■□□□□ 0.06
CLN3-201ENST00000333496 OR5K3A6NET4 321 aa15.4■□□□□ 0.06
CLN3-201ENST00000333496 B4E171 279 aa15.4■□□□□ 0.06
CLN3-201ENST00000333496 IFRD1O00458 451 aaPredicted RBP15.4■□□□□ 0.06
CLN3-201ENST00000333496 TOX3O15405 576 aaPredicted RBP15.4■□□□□ 0.06
CLN3-201ENST00000333496 TTI1O43156 1089 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms