RNA–Protein interactions for RNA: ENST00000298966.6

SMCO4-201, Transcript of single-pass membrane protein with coiled-coil domains 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMCO4, Length 1,104 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO4-201ENST00000298966 CMKLR1Q99788 373 aa20.72■□□□□ 0.91
SMCO4-201ENST00000298966 GPR63Q9BZJ6 419 aa20.72■□□□□ 0.91
SMCO4-201ENST00000298966 MBNL1Q9NR56 388 aaKnown RBP20.72■□□□□ 0.91
SMCO4-201ENST00000298966 PSD3Q9NYI0 1048 aa20.72■□□□□ 0.91
SMCO4-201ENST00000298966 SPO11Q9Y5K1 396 aa20.72■□□□□ 0.91
SMCO4-201ENST00000298966 AREL1O15033 823 aa20.71■□□□□ 0.91
SMCO4-201ENST00000298966 PFDN6O15212 129 aa20.71■□□□□ 0.91
SMCO4-201ENST00000298966 WT1P19544 449 aaPredicted RBP20.71■□□□□ 0.91
SMCO4-201ENST00000298966 OGNP20774 298 aaKnown RBP20.71■□□□□ 0.91
SMCO4-201ENST00000298966 ETV5P41161 510 aa20.71■□□□□ 0.91
SMCO4-201ENST00000298966 SLC18A1P54219 525 aa20.71■□□□□ 0.91
SMCO4-201ENST00000298966 CLCA4Q14CN2 919 aa20.71■□□□□ 0.91
SMCO4-201ENST00000298966 TIFABQ6ZNK6 161 aa20.71■□□□□ 0.91
SMCO4-201ENST00000298966 TTC7BQ86TV6 843 aa20.71■□□□□ 0.91
SMCO4-201ENST00000298966 CBARPQ8N350 705 aaPredicted RBP20.71■□□□□ 0.91
SMCO4-201ENST00000298966 Q8N9G6 341 aaPredicted RBP20.71■□□□□ 0.91
SMCO4-201ENST00000298966 TP53I13Q8NBR0 393 aaPredicted RBP20.71■□□□□ 0.91
SMCO4-201ENST00000298966 MZB1Q8WU39 189 aa20.71■□□□□ 0.91
SMCO4-201ENST00000298966 TSACCQ96A04 125 aaPredicted RBP20.71■□□□□ 0.91
SMCO4-201ENST00000298966 CDKN2AIPNLQ96HQ2 116 aa20.71■□□□□ 0.91
SMCO4-201ENST00000298966 KLHL32Q96NJ5 620 aa20.71■□□□□ 0.91
SMCO4-201ENST00000298966 ZFYVE1Q9HBF4 777 aa20.71■□□□□ 0.91
SMCO4-201ENST00000298966 RAD18Q9NS91 495 aa20.71■□□□□ 0.91
SMCO4-201ENST00000298966 IARS2Q9NSE4 1012 aaKnown RBP20.71■□□□□ 0.91
SMCO4-201ENST00000298966 CORO1CQ9ULV4 474 aaPredicted RBP20.71■□□□□ 0.91
SMCO4-201ENST00000298966 VPS9D1Q9Y2B5 631 aa20.71■□□□□ 0.91
SMCO4-201ENST00000298966 ARL5AQ9Y689 179 aa20.71■□□□□ 0.91
SMCO4-201ENST00000298966 USP9YO00507 2555 aaPredicted RBP20.7■□□□□ 0.9
SMCO4-201ENST00000298966 ARNTP27540 789 aa20.7■□□□□ 0.9
SMCO4-201ENST00000298966 HTR1BP28222 390 aa20.7■□□□□ 0.9
SMCO4-201ENST00000298966 LIMK2P53671 638 aa20.7■□□□□ 0.9
SMCO4-201ENST00000298966 ZFP36L1Q07352 338 aaKnown RBP20.7■□□□□ 0.9
SMCO4-201ENST00000298966 ALG11Q2TAA5 492 aa20.7■□□□□ 0.9
SMCO4-201ENST00000298966 TMEM164Q5U3C3 297 aa20.7■□□□□ 0.9
SMCO4-201ENST00000298966 DTX1Q86Y01 620 aa20.7■□□□□ 0.9
SMCO4-201ENST00000298966 PTRH1Q86Y79 214 aaKnown RBP20.7■□□□□ 0.9
SMCO4-201ENST00000298966 C2CD4AQ8NCU7 369 aaPredicted RBP20.7■□□□□ 0.9
SMCO4-201ENST00000298966 ACMSDQ8TDX5 336 aa20.7■□□□□ 0.9
SMCO4-201ENST00000298966 HDAC10Q969S8 669 aa20.7■□□□□ 0.9
SMCO4-201ENST00000298966 DNAJC1Q96KC8 554 aaKnown RBP20.7■□□□□ 0.9
SMCO4-201ENST00000298966 SMC6Q96SB8 1091 aa20.7■□□□□ 0.9
SMCO4-201ENST00000298966 TCF12Q99081 682 aa20.7■□□□□ 0.9
SMCO4-201ENST00000298966 RBBP8Q99708 897 aa20.7■□□□□ 0.9
SMCO4-201ENST00000298966 RHOJQ9H4E5 214 aa20.7■□□□□ 0.9
SMCO4-201ENST00000298966 FOXJ2Q9P0K8 574 aa20.7■□□□□ 0.9
SMCO4-201ENST00000298966 IL17CQ9P0M4 197 aa20.7■□□□□ 0.9
SMCO4-201ENST00000298966 SLC2A6Q9UGQ3 507 aa20.7■□□□□ 0.9
SMCO4-201ENST00000298966 APPL1Q9UKG1 709 aa20.7■□□□□ 0.9
SMCO4-201ENST00000298966 LRP4O75096 1905 aa20.69■□□□□ 0.9
SMCO4-201ENST00000298966 MT-ND3P03897 115 aa20.69■□□□□ 0.9
SMCO4-201ENST00000298966 XPAP23025 273 aaPredicted RBP20.69■□□□□ 0.9
SMCO4-201ENST00000298966 IRF4Q15306 451 aa20.69■□□□□ 0.9
SMCO4-201ENST00000298966 LRRC73Q5JTD7 316 aa20.69■□□□□ 0.9
SMCO4-201ENST00000298966 AARS2Q5JTZ9 985 aaKnown RBP20.69■□□□□ 0.9
SMCO4-201ENST00000298966 ENPP7Q6UWV6 458 aa20.69■□□□□ 0.9
SMCO4-201ENST00000298966 STRA8Q7Z7C7 330 aa20.69■□□□□ 0.9
SMCO4-201ENST00000298966 SDCCAG8Q86SQ7 713 aaPredicted RBP20.69■□□□□ 0.9
SMCO4-201ENST00000298966 SRRM1Q8IYB3 904 aaKnown RBP20.69■□□□□ 0.9
SMCO4-201ENST00000298966 UNC5BQ8IZJ1 945 aa20.69■□□□□ 0.9
SMCO4-201ENST00000298966 OR6P1Q8NGX9 317 aa20.69■□□□□ 0.9
SMCO4-201ENST00000298966 MRRFQ96E11 262 aaKnown RBP20.69■□□□□ 0.9
SMCO4-201ENST00000298966 CDH19Q9H159 772 aa20.69■□□□□ 0.9
SMCO4-201ENST00000298966 AKAP7Q9P0M2 348 aaPredicted RBP20.69■□□□□ 0.9
SMCO4-201ENST00000298966 C1orf232A0A0U1RR37 186 aa20.68■□□□□ 0.9
SMCO4-201ENST00000298966 C9orf172C9J069 976 aa20.68■□□□□ 0.9
SMCO4-201ENST00000298966 PRKCGP05129 697 aa20.68■□□□□ 0.9
SMCO4-201ENST00000298966 PIRTP0C851 137 aa20.68■□□□□ 0.9
SMCO4-201ENST00000298966 GLB1P16278 677 aa20.68■□□□□ 0.9
SMCO4-201ENST00000298966 PPARGP37231 505 aaPredicted RBP20.68■□□□□ 0.9
SMCO4-201ENST00000298966 ATP1A2P50993 1020 aa20.68■□□□□ 0.9
SMCO4-201ENST00000298966 NFATC4Q14934 902 aa20.68■□□□□ 0.9
SMCO4-201ENST00000298966 RNF187Q5TA31 235 aaPredicted RBP20.68■□□□□ 0.9
SMCO4-201ENST00000298966 ERAP2Q6P179 960 aa20.68■□□□□ 0.9
SMCO4-201ENST00000298966 BORAQ6PGQ7 559 aa20.68■□□□□ 0.9
SMCO4-201ENST00000298966 GPR156Q8NFN8 814 aa20.68■□□□□ 0.9
SMCO4-201ENST00000298966 OR4K2Q8NGD2 314 aa20.68■□□□□ 0.9
SMCO4-201ENST00000298966 OR4L1Q8NH43 312 aa20.68■□□□□ 0.9
SMCO4-201ENST00000298966 DTX3LQ8TDB6 740 aa20.68■□□□□ 0.9
SMCO4-201ENST00000298966 TBRG4Q969Z0 631 aaKnown RBP eCLIP20.68■□□□□ 0.98e-8■■■■■ 61.9
SMCO4-201ENST00000298966 CABS1Q96KC9 395 aa20.68■□□□□ 0.9
SMCO4-201ENST00000298966 WRAP53Q9BUR4 548 aaKnown RBP20.68■□□□□ 0.9
SMCO4-201ENST00000298966 EPN3Q9H201 632 aa20.68■□□□□ 0.9
SMCO4-201ENST00000298966 CATSPERZQ9NTU4 200 aa20.68■□□□□ 0.9
SMCO4-201ENST00000298966 KLQ9UEF7 1012 aa20.68■□□□□ 0.9
SMCO4-201ENST00000298966 FBXO5Q9UKT4 447 aa20.68■□□□□ 0.9
SMCO4-201ENST00000298966 RNF215Q9Y6U7 377 aa20.68■□□□□ 0.9
SMCO4-201ENST00000298966 ZFC3H1O60293 1989 aaKnown RBP20.68■□□□□ 0.9
SMCO4-201ENST00000298966 LRRK1Q38SD2 2015 aa20.68■□□□□ 0.9
SMCO4-201ENST00000298966 RGSL1A5PLK6 1076 aa20.67■□□□□ 0.9
SMCO4-201ENST00000298966 TRIM49D1C9J1S8 452 aa20.67■□□□□ 0.9
SMCO4-201ENST00000298966 IQCJ-SCHIP1C9J366 451 aaPredicted RBP20.67■□□□□ 0.9
SMCO4-201ENST00000298966 PRPF4O43172 522 aaKnown RBP eCLIP20.67■□□□□ 0.92e-6■■■■□ 23.9
SMCO4-201ENST00000298966 SHOX2O60902 331 aaPredicted RBP20.67■□□□□ 0.9
SMCO4-201ENST00000298966 PIAS1O75925 651 aa20.67■□□□□ 0.9
SMCO4-201ENST00000298966 BRAFP15056 766 aa20.67■□□□□ 0.9
SMCO4-201ENST00000298966 PNLIPP16233 465 aa20.67■□□□□ 0.9
SMCO4-201ENST00000298966 CTPS1P17812 591 aa20.67■□□□□ 0.9
SMCO4-201ENST00000298966 VIPR1P32241 457 aa20.67■□□□□ 0.9
SMCO4-201ENST00000298966 MDH1P40925 334 aaKnown RBP20.67■□□□□ 0.9
SMCO4-201ENST00000298966 LEPRP48357 1165 aaKnown RBP20.67■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms