RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 OR2T34Q8NGX1 318 aa13.83□□□□□ -0.2
SS18-201ENST00000269137 ZNF483Q8TF39 744 aaPredicted RBP13.83□□□□□ -0.2
SS18-201ENST00000269137 SKA1Q96BD8 255 aa13.83□□□□□ -0.2
SS18-201ENST00000269137 NELL2Q99435 816 aa13.83□□□□□ -0.2
SS18-201ENST00000269137 TRIM54Q9BYV2 358 aa13.83□□□□□ -0.2
SS18-201ENST00000269137 LTB4R2Q9NPC1 389 aa13.83□□□□□ -0.2
SS18-201ENST00000269137 PRDM6Q9NQX0 595 aa13.83□□□□□ -0.2
SS18-201ENST00000269137 PHPT1Q9NRX4 125 aaPredicted RBP13.83□□□□□ -0.2
SS18-201ENST00000269137 USP36Q9P275 1121 aaKnown RBP13.83□□□□□ -0.2
SS18-201ENST00000269137 PCTPQ9UKL6 214 aa13.83□□□□□ -0.2
SS18-201ENST00000269137 APOBEC2Q9Y235 224 aaKnown RBP13.83□□□□□ -0.2
SS18-201ENST00000269137 DNMT3AQ9Y6K1 912 aaPredicted RBP13.83□□□□□ -0.2
SS18-201ENST00000269137 KANSL1LA0AUZ9 987 aa13.82□□□□□ -0.2
SS18-201ENST00000269137 KRBA1A5PL33 1030 aa13.82□□□□□ -0.2
SS18-201ENST00000269137 LRRC72A6NJI9 287 aa13.82□□□□□ -0.2
SS18-201ENST00000269137 C10orf142B7Z368 130 aa13.82□□□□□ -0.2
SS18-201ENST00000269137 UBFD1O14562 309 aaKnown RBP13.82□□□□□ -0.2
SS18-201ENST00000269137 GRID2O43424 1007 aa13.82□□□□□ -0.2
SS18-201ENST00000269137 KIAA0754O94854 1291 aa13.82□□□□□ -0.2
SS18-201ENST00000269137 FGF4P08620 206 aa13.82□□□□□ -0.2
SS18-201ENST00000269137 CDH13P55290 713 aa13.82□□□□□ -0.2
SS18-201ENST00000269137 GALNTL6Q49A17 601 aa13.82□□□□□ -0.2
SS18-201ENST00000269137 SPDYAQ5MJ70 313 aa13.82□□□□□ -0.2
SS18-201ENST00000269137 SH2D4BQ5SQS7 431 aa13.82□□□□□ -0.2
SS18-201ENST00000269137 TTC23LQ6PF05 361 aa13.82□□□□□ -0.2
SS18-201ENST00000269137 UBE2R2Q712K3 238 aaPredicted RBP13.82□□□□□ -0.2
SS18-201ENST00000269137 RPS27LQ71UM5 84 aaKnown RBP13.82□□□□□ -0.2
SS18-201ENST00000269137 MTDHQ86UE4 582 aaKnown RBP13.82□□□□□ -0.2
SS18-201ENST00000269137 FAM124AQ86V42 546 aa13.82□□□□□ -0.2
SS18-201ENST00000269137 AFAP1L2Q8N4X5 818 aa13.82□□□□□ -0.2
SS18-201ENST00000269137 DENND6BQ8NEG7 585 aa13.82□□□□□ -0.2
SS18-201ENST00000269137 OR2L2Q8NH16 312 aa13.82□□□□□ -0.2
SS18-201ENST00000269137 MAFAQ8NHW3 353 aaPredicted RBP13.82□□□□□ -0.2
SS18-201ENST00000269137 UBTD2Q8WUN7 234 aa13.82□□□□□ -0.2
SS18-201ENST00000269137 HMGB4Q8WW32 186 aa13.82□□□□□ -0.2
SS18-201ENST00000269137 KLK6Q92876 244 aa13.82□□□□□ -0.2
SS18-201ENST00000269137 RHBDF1Q96CC6 855 aa13.82□□□□□ -0.2
SS18-201ENST00000269137 EBF4Q9BQW3 602 aa13.82□□□□□ -0.2
SS18-201ENST00000269137 LGR4Q9BXB1 951 aa13.82□□□□□ -0.2
SS18-201ENST00000269137 SHCBP1LQ9BZQ2 653 aa13.82□□□□□ -0.2
SS18-201ENST00000269137 BTBD1Q9H0C5 482 aa13.82□□□□□ -0.2
SS18-201ENST00000269137 EBF1Q9UH73 591 aa13.82□□□□□ -0.2
SS18-201ENST00000269137 PDE10AQ9Y233 779 aa13.82□□□□□ -0.2
SS18-201ENST00000269137 TMEM98Q9Y2Y6 226 aa13.82□□□□□ -0.2
SS18-201ENST00000269137 KLHL33A6NCF5 533 aa13.81□□□□□ -0.2
SS18-201ENST00000269137 MGAT4DA6NG13 374 aa13.81□□□□□ -0.2
SS18-201ENST00000269137 ANKRD65E5RJM6 399 aa13.81□□□□□ -0.2
SS18-201ENST00000269137 E2F3O00716 465 aa13.81□□□□□ -0.2
SS18-201ENST00000269137 POP7O75817 140 aaKnown RBP13.81□□□□□ -0.2
SS18-201ENST00000269137 MLYCDO95822 493 aa13.81□□□□□ -0.2
SS18-201ENST00000269137 HOXC4P09017 264 aaPredicted RBP13.81□□□□□ -0.2
SS18-201ENST00000269137 MYCLP1P12525 358 aaPredicted RBP13.81□□□□□ -0.2
SS18-201ENST00000269137 SERPINB3P29508 390 aa13.81□□□□□ -0.2
SS18-201ENST00000269137 ACSL1P33121 698 aa13.81□□□□□ -0.2
SS18-201ENST00000269137 RPIAP49247 311 aa13.81□□□□□ -0.2
SS18-201ENST00000269137 AP1S2P56377 157 aa13.81□□□□□ -0.2
SS18-201ENST00000269137 PPP2CBP62714 309 aa13.81□□□□□ -0.2
SS18-201ENST00000269137 PPP2CAP67775 309 aa13.81□□□□□ -0.2
SS18-201ENST00000269137 SH3BP2P78314 561 aa13.81□□□□□ -0.2
SS18-201ENST00000269137 ARHGAP8P85298 464 aa13.81□□□□□ -0.2
SS18-201ENST00000269137 TUBB3Q13509 450 aa13.81□□□□□ -0.2
SS18-201ENST00000269137 LACTB2Q53H82 288 aaPredicted RBP13.81□□□□□ -0.2
SS18-201ENST00000269137 C11orf96Q7Z7L8 435 aa13.81□□□□□ -0.2
SS18-201ENST00000269137 HM13Q8TCT9 377 aa13.81□□□□□ -0.2
SS18-201ENST00000269137 AGR3Q8TD06 166 aa13.81□□□□□ -0.2
SS18-201ENST00000269137 SKA2Q8WVK7 121 aaPredicted RBP13.81□□□□□ -0.2
SS18-201ENST00000269137 NSUN5Q96P11 429 aaKnown RBP13.81□□□□□ -0.2
SS18-201ENST00000269137 FBXL21Q9UKT6 434 aa13.81□□□□□ -0.2
SS18-201ENST00000269137 TRAF6Q9Y4K3 522 aa13.81□□□□□ -0.2
SS18-201ENST00000269137 TAPBPO15533 448 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 PSIP1O75475 530 aaKnown RBP13.8□□□□□ -0.2
SS18-201ENST00000269137 ANXA5P08758 320 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 HIST1H2AGP0C0S8 130 aaPredicted RBP13.8□□□□□ -0.2
SS18-201ENST00000269137 HIST1H2ADP20671 130 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 CYP2A7P20853 494 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 IGFALSP35858 605 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 GGT5P36269 586 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 GAS6Q14393 721 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 FAM91A1Q658Y4 838 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 XKR5Q6UX68 686 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 LRRTM4Q86VH4 590 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 CFAP206Q8IYR0 622 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 TCAIMQ8N3R3 496 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 OXR1Q8N573 874 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 MAPK15Q8TD08 544 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 MCOLN3Q8TDD5 553 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 TRPC4APQ8TEL6 797 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 FOXJ1Q92949 421 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 ERP27Q96DN0 273 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 HIST1H2AHQ96KK5 128 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 RILPQ96NA2 401 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 HIST1H2AJQ99878 128 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 EGFL8Q99944 293 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 H2AFJQ9BTM1 129 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 MYLK2Q9H1R3 596 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 DPEP2Q9H4A9 486 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 TNFRSF12AQ9NP84 129 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 CD93Q9NPY3 652 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 EIF2B4Q9UI10 523 aaKnown RBP13.8□□□□□ -0.2
SS18-201ENST00000269137 OR1A2Q9Y585 309 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms