RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 PQBP1O60828 265 aaKnown RBP13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 IFNGR1P15260 489 aa13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 EPHA3P29320 983 aa13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 COMMD3Q9UBI1 195 aa13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 A0A1B0GVM2 712 aa13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 TCAF2A6NFQ2 919 aa13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 COL6A1P12109 1028 aa13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 IKBKEQ14164 716 aa13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 CELF1Q92879 486 aaKnown RBP13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 AP1M2Q9Y6Q5 423 aa13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 ADGRL2O95490 1459 aa13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 ZFYVE16Q7Z3T8 1539 aa13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 CDC25CP30307 473 aa13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 DLG2Q15700 870 aa13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 TEX19Q8NA77 164 aa13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 PLEKHA3Q9HB20 300 aa13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 CCDC163A0A0D9SF12 145 aa13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 H3BRB1 525 aa13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 NARSO43776 548 aaKnown RBP13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 BCKDHAP12694 445 aa13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 METTL7BQ6UX53 244 aa13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 MSL3Q8N5Y2 521 aaKnown RBP13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 TMEM145Q8NBT3 493 aa13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 DNAJB8Q8NHS0 232 aa13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 ZBED6CLQ96FA7 236 aaPredicted RBP13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 CENPNQ96H22 339 aaPredicted RBP13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 TUT1Q9H6E5 874 aaKnown RBP13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 BRF2Q9HAW0 419 aa13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 MRPS23Q9Y3D9 190 aaKnown RBP13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 AKAP3O75969 853 aa13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 MINDY4Q4G0A6 757 aa13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 MSANTD2Q6P1R3 559 aa13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 DCDC5Q6ZRR9 648 aa13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 ARHGAP12Q8IWW6 846 aa13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 CLIP4Q8N3C7 705 aa13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 E7EQ34 232 aa13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 ATG12O94817 140 aa13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 UQCRC1P31930 480 aa13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 NFKB2Q00653 900 aa13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 NRSN1Q8IZ57 195 aa13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 GMCL1P1Q8NEA9 526 aa13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 OR51D1Q8NGF3 324 aa13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 ZNF431Q8TF32 576 aaPredicted RBP13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 GPRC5CQ9NQ84 441 aa13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 SAMD9LQ8IVG5 1584 aa13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 HTR3EA5X5Y0 456 aa13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 IL1R1P14778 569 aa13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 SV2AQ7L0J3 742 aa13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 ZBTB46Q86UZ6 589 aa13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 ZNF282Q9UDV7 671 aaPredicted RBP13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 CCRL2O00421 344 aa13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 ADH6P28332 368 aa13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 CD83Q01151 205 aa13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 RIN1Q13671 783 aa13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 TIGD6Q17RP2 521 aa13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 LIX1Q8N485 282 aa13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 ZBTB8BQ8NAP8 495 aaPredicted RBP13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 PROKR2Q8NFJ6 384 aa13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 BBS1Q8NFJ9 593 aa13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 ROPN1LQ96C74 230 aa13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 AGO4Q9HCK5 861 aaKnown RBP13.75□□□□□ -0.21
CCDC88A-201ENST00000263630 USP6P35125 1406 aa13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 ERBB2P04626 1255 aa13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 HCKP08631 526 aa13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 MAGEA8P43361 318 aa13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 VWA5B1Q5TIE3 1220 aa13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 GARNL3Q5VVW2 1013 aa13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 ZNF670Q9BS34 389 aa13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 BPIFA1Q9NP55 256 aa13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 TMEM2Q9UHN6 1383 aa13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 RBM47A0AV96 593 aaKnown RBP13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 ZNF705EA8MWA4 302 aaPredicted RBP13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 PEX14O75381 377 aa13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 SEC23BQ15437 767 aa13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 RBM48Q5RL73 367 aaKnown RBP13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 C6orf52Q5T4I8 152 aa13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 RIMKLBQ9ULI2 386 aa13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 PRKCHP24723 683 aa13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 MC4RP32245 332 aa13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 AENQ8WTP8 325 aaKnown RBP13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 HTATIP2Q9BUP3 242 aa13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 HIPK3Q9H422 1215 aa13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 PTTG2Q9NZH5 202 aa13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 GSKIPQ9P0R6 139 aa13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 MT-CO2P00403 227 aa13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 GSTM2P28161 218 aa13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 AIF1P55008 147 aa13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 MRPL49Q13405 166 aaKnown RBP13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 MED27Q6P2C8 311 aa13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 CCDC28AQ8IWP9 274 aa13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 BPIFB1Q8TDL5 484 aa13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 FDXACB1Q9BRP7 624 aaPredicted RBP13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 PCYOX1Q9UHG3 505 aa13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 PCDHGA8Q9Y5G5 932 aa13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 SPIN1Q9Y657 262 aaPredicted RBP13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 PRPF38BQ5VTL8 546 aaKnown RBP13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 ZPBP2Q6X784 338 aa13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 ADGRD2Q7Z7M1 963 aa13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 SLC9B2Q86UD5 537 aa13.74□□□□□ -0.21
CCDC88A-201ENST00000263630 TBC1D3DA0A087WVF3 549 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 95 ms