RNA–Protein interactions for RNA: ENST00000261517.9

VPS13C-202, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 13,400 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-202ENST00000261517 PLIN3O60664 434 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 PPP1R11O60927 126 aaPredicted RBP4.25□□□□□ -1.73
VPS13C-202ENST00000261517 RSL1D1O76021 490 aaKnown RBP4.25□□□□□ -1.73
VPS13C-202ENST00000261517 NCF1P14598 390 aaPredicted RBP4.25□□□□□ -1.73
VPS13C-202ENST00000261517 FCHO2Q0JRZ9 810 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 NPTX1Q15818 432 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 RPTNQ6XPR3 784 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 C11orf96Q7Z7L8 435 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 JAZF1Q86VZ6 243 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 RFWD2Q8NHY2 731 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 FAM81AQ8TBF8 368 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 NXPE3Q969Y0 559 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 EFHD2Q96C19 240 aaPredicted RBP4.25□□□□□ -1.73
VPS13C-202ENST00000261517 MRI1Q9BV20 369 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 SPRTNQ9H040 489 aaPredicted RBP4.25□□□□□ -1.73
VPS13C-202ENST00000261517 CRTAC1Q9NQ79 661 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 GDE1Q9NZC3 331 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 ZNF536O15090 1300 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 TMEM150CB9EJG8 249 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 PAPSS1O43252 624 aaPredicted RBP4.25□□□□□ -1.73
VPS13C-202ENST00000261517 CST1P01037 141 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 ADH5P11766 374 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 NRIP1P48552 1158 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 MLLT6P55198 1093 aaPredicted RBP4.25□□□□□ -1.73
VPS13C-202ENST00000261517 RPL7AP62424 266 aaKnown RBP4.25□□□□□ -1.73
VPS13C-202ENST00000261517 SLC18A2Q05940 514 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 SF3A3Q12874 501 aaKnown RBP eCLIP4.25□□□□□ -1.732e-8■■■■□ 21.7
VPS13C-202ENST00000261517 DUSP4Q13115 394 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 HKDC1Q2TB90 917 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 APTXQ7Z2E3 356 aaKnown RBP4.25□□□□□ -1.73
VPS13C-202ENST00000261517 THAP5Q7Z6K1 395 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 ADGRG2Q8IZP9 1017 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 OR6C4Q8NGE1 309 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 ZUFSPQ96AP4 578 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 SEC14L3Q9UDX4 400 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 NUDT5Q9UKK9 219 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 ING4Q9UNL4 249 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 IFT52Q9Y366 437 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 STRCP1A6NGW2 1772 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 PPEF2O14830 753 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 OR6B1O95007 311 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 INHAP05111 366 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 SLC7A1P30825 629 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 HOXC12P31275 282 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 ARHGDIBP52566 201 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 CLCQ05315 142 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 KCNJ11Q14654 390 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 CCDC157Q569K6 752 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 TPRG1Q6ZUI0 275 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 CLNKQ7Z7G1 428 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 ANKRD49Q8WVL7 239 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 CPT1BQ92523 772 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 SUV39H2Q9H5I1 410 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 ZNF358Q9NW07 568 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 SMPD3Q9NY59 655 aaPredicted RBP4.25□□□□□ -1.73
VPS13C-202ENST00000261517 COMMD9Q9P000 198 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 ECM29Q5VYK3 1845 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 PAPPA2Q9BXP8 1791 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 XIRP1Q702N8 1843 aaKnown RBP4.25□□□□□ -1.73
VPS13C-202ENST00000261517 SEC24DO94855 1032 aaPredicted RBP4.25□□□□□ -1.73
VPS13C-202ENST00000261517 CYB5AP00167 134 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 CD2P06729 351 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 RAP2AP10114 183 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 ZNF12P17014 697 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 PRKCHP24723 683 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 FAM117BQ6P1L5 589 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 TUBA3EQ6PEY2 450 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 KLHL24Q6TFL4 600 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 PPP1R3FQ6ZSY5 799 aaPredicted RBP4.25□□□□□ -1.73
VPS13C-202ENST00000261517 TMCO2Q7Z6W1 182 aaPredicted RBP4.25□□□□□ -1.73
VPS13C-202ENST00000261517 SLC43A2Q8N370 569 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 SMYD1Q8NB12 490 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 TRAPPC12Q8WVT3 735 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 GPR22Q99680 433 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 GORASP1Q9BQQ3 440 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 ADAMTS5Q9UNA0 930 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 BAIAP2Q9UQB8 552 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 CACNA1SQ13698 1873 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 METTL21EPA6NDL7 271 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 SLC30A4O14863 429 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 ANPEPP15144 967 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 SLC9A5Q14940 896 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 ZNF630Q2M218 657 aaPredicted RBP4.25□□□□□ -1.73
VPS13C-202ENST00000261517 RGS21Q2M5E4 152 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 NUP54Q7Z3B4 507 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 MRPL10Q7Z7H8 261 aaKnown RBP4.25□□□□□ -1.73
VPS13C-202ENST00000261517 LRRTM4Q86VH4 590 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 ZNF567Q8N184 647 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 SLC35F5Q8WV83 523 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 SEMA4DQ92854 862 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 RTP4Q96DX8 246 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 AURKBQ96GD4 344 aaPredicted RBP4.25□□□□□ -1.73
VPS13C-202ENST00000261517 TPD52L3Q96J77 140 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 ZNF382Q96SR6 550 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 RAD9AQ99638 391 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 MAPKAP1Q9BPZ7 522 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 APOL2Q9BQE5 337 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 PRODH2Q9UF12 536 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 EPHA6Q9UF33 1036 aa4.25□□□□□ -1.73
VPS13C-202ENST00000261517 PADI2Q9Y2J8 665 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms