RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 ELK4P28324 431 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 RPL4P36578 427 aaKnown RBP10.3□□□□□ -0.76
VCL-201ENST00000211998 SCNN1GP51170 649 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 GPX6P59796 221 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 RAPSNQ13702 412 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 TSTQ16762 297 aaKnown RBP10.3□□□□□ -0.76
VCL-201ENST00000211998 CHST15Q7LFX5 561 aaPredicted RBP10.3□□□□□ -0.76
VCL-201ENST00000211998 MAFIPQ8WZ33 124 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 RFT1Q96AA3 541 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 KREMEN1Q96MU8 473 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 LPIN3Q9BQK8 851 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.3□□□□□ -0.761e-6■□□□□ 8.6
VCL-201ENST00000211998 FAM198AQ9UFP1 575 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 SPIN1Q9Y657 262 aaPredicted RBP10.3□□□□□ -0.76
VCL-201ENST00000211998 PTCH2Q9Y6C5 1203 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 CASZ1Q86V15 1759 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 PIP5K1BO14986 540 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 DENRO43583 198 aaKnown RBP10.3□□□□□ -0.76
VCL-201ENST00000211998 GNRH1P01148 92 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 SMIM10L2AP0DMW4 78 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 SMIM10L2BP0DMW5 78 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 ZNF14P17017 642 aaPredicted RBP10.3□□□□□ -0.76
VCL-201ENST00000211998 NTSP30990 170 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 PTP4A2Q12974 167 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 SLC13A2Q13183 592 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 EIF2S3LQ2VIR3 472 aaKnown RBP10.3□□□□□ -0.76
VCL-201ENST00000211998 ADNP2Q6IQ32 1131 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 RD3Q7Z3Z2 195 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 C9orf43Q8TAL5 461 aaPredicted RBP10.3□□□□□ -0.76
VCL-201ENST00000211998 PDGFDQ9GZP0 370 aaPredicted RBP10.3□□□□□ -0.76
VCL-201ENST00000211998 ELAC1Q9H777 363 aaKnown RBP10.3□□□□□ -0.76
VCL-201ENST00000211998 NPHS1O60500 1241 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 CDK4P11802 303 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 MAPK9P45984 424 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 GNPDA1P46926 289 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 FNTBP49356 437 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 TAS2R41P59536 307 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 SULT2A1Q06520 285 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 IQCCQ4KMZ1 466 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 HECTD2Q5U5R9 776 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 COMMD7Q86VX2 200 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 GHDCQ8N2G8 530 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 VGLL2Q8N8G2 317 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 INO80EQ8NBZ0 244 aaPredicted RBP10.3□□□□□ -0.76
VCL-201ENST00000211998 CXorf40AQ8TE69 158 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 LINGO1Q96FE5 620 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 AHCYL2Q96HN2 611 aaKnown RBP10.3□□□□□ -0.76
VCL-201ENST00000211998 DPCDQ9BVM2 203 aaPredicted RBP10.3□□□□□ -0.76
VCL-201ENST00000211998 RNF208Q9H0X6 261 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 NEURL4Q96JN8 1562 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 COL3A1P02461 1466 aaPredicted RBP10.3□□□□□ -0.76
VCL-201ENST00000211998 FPGTO14772 594 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 CCNB2O95067 398 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 KCNA5P22460 613 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 WSCD1Q658N2 575 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 C16orf59Q7L2K0 433 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 SLC26A9Q7LBE3 791 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 TMEM199Q8N511 208 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 EMID1Q96A84 441 aaPredicted RBP10.3□□□□□ -0.76
VCL-201ENST00000211998 FGFBP2Q9BYJ0 223 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 ZDHHC6Q9H6R6 413 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 TAS2R3Q9NYW6 316 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 ISM1B1AKI9 464 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 INMT-MINDY4F8WBC2 141 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 SMIM22K7EJ46 135 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 KLF11O14901 512 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 CES1P23141 567 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 BEX3Q00994 111 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 BMT2Q1RMZ1 405 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 ADGRG6Q86SQ4 1221 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 ADAMTSL2Q86TH1 951 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 TMEM203Q969S6 136 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 ZYG11BQ9C0D3 744 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 TP63Q9H3D4 680 aaPredicted RBP10.3□□□□□ -0.76
VCL-201ENST00000211998 SLA2Q9H6Q3 261 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 LRTM1Q9HBL6 345 aa10.3□□□□□ -0.76
VCL-201ENST00000211998 RIMBP3CA6NJZ7 1639 aa10.29□□□□□ -0.76
VCL-201ENST00000211998 RIMBP3BA6NNM3 1639 aa10.29□□□□□ -0.76
VCL-201ENST00000211998 RIMBP3Q9UFD9 1639 aa10.29□□□□□ -0.76
VCL-201ENST00000211998 NPEPPSL1A6NEC2 478 aa10.29□□□□□ -0.76
VCL-201ENST00000211998 DISC1C4P0D8 188 aa10.29□□□□□ -0.76
VCL-201ENST00000211998 E9PAM4 449 aa10.29□□□□□ -0.76
VCL-201ENST00000211998 C1QTNF3-AMACRE9PGA6 284 aa10.29□□□□□ -0.76
VCL-201ENST00000211998 SLC28A2O43868 658 aa10.29□□□□□ -0.76
VCL-201ENST00000211998 IL32P24001 234 aa10.29□□□□□ -0.76
VCL-201ENST00000211998 RAB5BP61020 215 aa10.29□□□□□ -0.76
VCL-201ENST00000211998 SNRPD2P62316 118 aaKnown RBP10.29□□□□□ -0.76
VCL-201ENST00000211998 ADAM15Q13444 863 aa10.29□□□□□ -0.76
VCL-201ENST00000211998 C4orf46Q504U0 113 aa10.29□□□□□ -0.76
VCL-201ENST00000211998 OR52E8Q6IFG1 317 aa10.29□□□□□ -0.76
VCL-201ENST00000211998 TIGD4Q8IY51 512 aa10.29□□□□□ -0.76
VCL-201ENST00000211998 MCCC1Q96RQ3 725 aaPredicted RBP10.29□□□□□ -0.76
VCL-201ENST00000211998 TSNAXQ99598 290 aaKnown RBP10.29□□□□□ -0.76
VCL-201ENST00000211998 PPIL3Q9H2H8 161 aaKnown RBP10.29□□□□□ -0.76
VCL-201ENST00000211998 QPCTLQ9NXS2 382 aa10.29□□□□□ -0.76
VCL-201ENST00000211998 ZNF490Q9ULM2 529 aaPredicted RBP10.29□□□□□ -0.76
VCL-201ENST00000211998 ZNF451Q9Y4E5 1061 aa10.29□□□□□ -0.76
VCL-201ENST00000211998 TEX46H3BTG2 121 aa10.29□□□□□ -0.76
VCL-201ENST00000211998 UROSP10746 265 aa10.29□□□□□ -0.76
VCL-201ENST00000211998 RPL3P39023 403 aaKnown RBP10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms