RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 GTF2IRD2BQ6EKJ0 949 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 C17orf99Q6UX52 265 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 GPRIN3Q6ZVF9 776 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 TSPAN33Q86UF1 283 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 GTF2IRD2Q86UP8 949 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 SPARTQ8N0X7 666 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 PNPT1Q8TCS8 783 aaKnown RBP10.51□□□□□ -0.73
USP28-201ENST00000003302 ADAMTS16Q8TE57 1224 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 PLEKHA8Q96JA3 519 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 CGREF1Q99674 301 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 MGME1Q9BQP7 344 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 CIPCQ9C0C6 399 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 NLE1Q9NVX2 485 aaPredicted RBP10.51□□□□□ -0.73
USP28-201ENST00000003302 ZNF639Q9UID6 485 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 ZNF451Q9Y4E5 1061 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 NDST3O95803 873 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 LDLRP01130 860 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 CRHBPP24387 322 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 TUBA4AP68366 448 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 PERM1Q5SV97 790 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 SULT1C3Q6IMI6 304 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 DHRS4L2Q6PKH6 230 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 ABRAXAS1Q6UWZ7 409 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 GCNT7Q6ZNI0 430 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 GPSM1Q86YR5 675 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 STON2Q8WXE9 905 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 GTF2H4Q92759 462 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 EFHD1Q9BUP0 239 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 SACM1LQ9NTJ5 587 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 MARCH5Q9NX47 278 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 SLC6A14Q9UN76 642 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 YY2O15391 372 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 AKR1A1P14550 325 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 EPORP19235 508 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 ATP4BP51164 291 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 KPNA2P52292 529 aaKnown RBP10.51□□□□□ -0.73
USP28-201ENST00000003302 GP2P55259 537 aaKnown RBP10.51□□□□□ -0.73
USP28-201ENST00000003302 INPP5AQ14642 412 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 THEM5Q8N1Q8 247 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 DPH2Q9BQC3 489 aaPredicted RBP10.51□□□□□ -0.73
USP28-201ENST00000003302 IPPKQ9H8X2 491 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 ANKRD66B4E2M5 251 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 H0YJX3 145 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 OAZ2O95190 189 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 CYBAP13498 195 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 PKMP14618 531 aaKnown RBP10.51□□□□□ -0.73
USP28-201ENST00000003302 FMO3P31513 532 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 FLT3LGP49771 235 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 ERVK-8P63133 956 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 SIM2Q14190 667 aaPredicted RBP10.51□□□□□ -0.73
USP28-201ENST00000003302 TRIM71Q2Q1W2 868 aaKnown RBP10.51□□□□□ -0.73
USP28-201ENST00000003302 TMEM236Q5W0B7 351 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 CXorf57Q6NSI4 855 aaKnown RBP10.51□□□□□ -0.73
USP28-201ENST00000003302 CYP4Z1Q86W10 505 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 CCDC71Q8IV32 467 aaPredicted RBP10.51□□□□□ -0.73
USP28-201ENST00000003302 CHDHQ8NE62 594 aaPredicted RBP10.51□□□□□ -0.73
USP28-201ENST00000003302 GPR150Q8NGU9 434 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 VOPP1Q96AW1 172 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 DOK1Q99704 481 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 FUNDC2Q9BWH2 189 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 LIMD1Q9UGP4 676 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 M0R129 80 aa10.5□□□□□ -0.73
USP28-201ENST00000003302 AP3B1O00203 1094 aa10.5□□□□□ -0.73
USP28-201ENST00000003302 MTX2O75431 263 aa10.5□□□□□ -0.73
USP28-201ENST00000003302 FGF1P05230 155 aa10.5□□□□□ -0.73
USP28-201ENST00000003302 DGKEP52429 567 aa10.5□□□□□ -0.73
USP28-201ENST00000003302 CARD16Q5EG05 197 aa10.5□□□□□ -0.73
USP28-201ENST00000003302 TMTC4Q5T4D3 741 aa10.5□□□□□ -0.73
USP28-201ENST00000003302 DCDC5Q6ZRR9 648 aa10.5□□□□□ -0.73
USP28-201ENST00000003302 DET1Q7L5Y6 550 aa10.5□□□□□ -0.73
USP28-201ENST00000003302 VTCN1Q7Z7D3 282 aa10.5□□□□□ -0.73
USP28-201ENST00000003302 NDNFQ8TB73 568 aa10.5□□□□□ -0.73
USP28-201ENST00000003302 C9orf16Q9BUW7 83 aa10.5□□□□□ -0.73
USP28-201ENST00000003302 THUMPD3Q9BV44 507 aaKnown RBP10.5□□□□□ -0.73
USP28-201ENST00000003302 SELENONQ9NZV5 590 aa10.5□□□□□ -0.73
USP28-201ENST00000003302 TMEFF2Q9UIK5 374 aaPredicted RBP10.5□□□□□ -0.73
USP28-201ENST00000003302 ABCG2Q9UNQ0 655 aa10.5□□□□□ -0.73
USP28-201ENST00000003302 DUSP11O75319 330 aaKnown RBP10.5□□□□□ -0.73
USP28-201ENST00000003302 SLC2A4P14672 509 aa10.5□□□□□ -0.73
USP28-201ENST00000003302 DNAJB1P25685 340 aa10.5□□□□□ -0.73
USP28-201ENST00000003302 PRKCZQ05513 592 aa10.5□□□□□ -0.73
USP28-201ENST00000003302 RAPSNQ13702 412 aa10.5□□□□□ -0.73
USP28-201ENST00000003302 DGCR6Q14129 220 aa10.5□□□□□ -0.73
USP28-201ENST00000003302 RASAL3Q86YV0 1011 aa10.5□□□□□ -0.73
USP28-201ENST00000003302 SCML4Q8N228 414 aa10.5□□□□□ -0.73
USP28-201ENST00000003302 CENPSQ8N2Z9 138 aa10.5□□□□□ -0.73
USP28-201ENST00000003302 ZNF548Q8NEK5 533 aaPredicted RBP10.5□□□□□ -0.73
USP28-201ENST00000003302 TRIM54Q9BYV2 358 aa10.5□□□□□ -0.73
USP28-201ENST00000003302 TMEM184CQ9NVA4 438 aa10.5□□□□□ -0.73
USP28-201ENST00000003302 GPRC5BQ9NZH0 403 aa10.5□□□□□ -0.73
USP28-201ENST00000003302 CKAP5Q14008 2032 aa10.5□□□□□ -0.73
USP28-201ENST00000003302 SCN5AQ14524 2016 aa10.5□□□□□ -0.73
USP28-201ENST00000003302 WDFY4Q6ZS81 3184 aa10.5□□□□□ -0.73
USP28-201ENST00000003302 H0Y626 953 aa10.5□□□□□ -0.73
USP28-201ENST00000003302 COCHO43405 550 aa10.5□□□□□ -0.73
USP28-201ENST00000003302 TRIM16O95361 564 aa10.5□□□□□ -0.73
USP28-201ENST00000003302 SPIDRQ14159 915 aa10.5□□□□□ -0.73
USP28-201ENST00000003302 TRIP4Q15650 581 aaPredicted RBP10.5□□□□□ -0.73
USP28-201ENST00000003302 CPSF6Q16630 551 aaKnown RBP eCLIP10.5□□□□□ -0.73
USP28-201ENST00000003302 ATP6AP1LQ52LC2 224 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms