RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 CEP170BQ9Y4F5 1589 aaPredicted RBP5.67□□□□□ -1.5
SCN1A-216ENST00000637968 KCNU1A8MYU2 1149 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 C1orf196B1AJZ1 125 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 DISC1C4P0D8 188 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 PDCD5O14737 125 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 ANXA3P12429 323 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 ETS1P14921 441 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 CSF2RAP15509 400 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 HLA-DMAP28067 261 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 S100A2P29034 98 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 C21orf58P58505 322 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 TSPAN5P62079 268 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 PIGFQ07326 219 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 SLAMF1Q13291 335 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 ORC1Q13415 861 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 RIN1Q13671 783 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 ERV3-1Q14264 604 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 MEP1AQ16819 746 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 ADPRMQ3LIE5 342 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 PARP15Q460N3 678 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 MINDY4Q4G0A6 757 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 FLYWCH1Q4VC44 716 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 MFSD14BQ5SR56 506 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 CATSPEREQ5SY80 951 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 ANKRD22Q5VYY1 191 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 TEX261Q6UWH6 196 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 LRRC8DQ7L1W4 858 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 SLC16A13Q7RTY0 426 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 TXNRD3Q86VQ6 643 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 SLC22A9Q8IVM8 553 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 IL17RCQ8NAC3 791 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 ITFG1Q8TB96 612 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 BPIFB1Q8TDL5 484 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 PCNPQ8WW12 178 aaKnown RBP5.67□□□□□ -1.5
SCN1A-216ENST00000637968 ATOH1Q92858 354 aaPredicted RBP5.67□□□□□ -1.5
SCN1A-216ENST00000637968 ELP4Q96EB1 424 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 PDXPQ96GD0 296 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 ZNF594Q96JF6 807 aaPredicted RBP5.67□□□□□ -1.5
SCN1A-216ENST00000637968 ZNF668Q96K58 619 aaPredicted RBP5.67□□□□□ -1.5
SCN1A-216ENST00000637968 TSGA13Q96PP4 275 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 TSNAXQ99598 290 aaKnown RBP5.67□□□□□ -1.5
SCN1A-216ENST00000637968 FEM1AQ9BSK4 669 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 SORBS1Q9BX66 1292 aaKnown RBP5.67□□□□□ -1.5
SCN1A-216ENST00000637968 HDHD2Q9H0R4 259 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 OLA1Q9NTK5 396 aaKnown RBP5.67□□□□□ -1.5
SCN1A-216ENST00000637968 EGFL7Q9UHF1 273 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 NCKAP1Q9Y2A7 1128 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 RAP2CQ9Y3L5 183 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 U3KQ87 197 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 CPS1P31327 1500 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 MYO3AQ8NEV4 1616 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 CNTNAP2Q9UHC6 1331 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 SLC9B1P1A6NJY1 282 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 TO15178 435 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 TCAPO15273 167 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 B4GAT1O43505 415 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 KHDRBS3O75525 346 aaKnown RBP5.67□□□□□ -1.5
SCN1A-216ENST00000637968 IL33O95760 270 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 RAF1P04049 648 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 TCF3P15923 654 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 ITGB6P18564 788 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 SAT1P21673 171 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 CRHBPP24387 322 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 PTAFRP25105 342 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 GMPRP36959 345 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 CAP1Q01518 475 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 ZNF91Q05481 1191 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 MAPKAPK3Q16644 382 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 BSPRYQ5W0U4 402 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 PKN3Q6P5Z2 889 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 GK5Q6ZS86 529 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 GPR142Q7Z601 462 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 OXR1Q8N573 874 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 SLC38A4Q969I6 547 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 AURKBQ96GD4 344 aaPredicted RBP5.67□□□□□ -1.5
SCN1A-216ENST00000637968 RBM18Q96H35 190 aaKnown RBP5.67□□□□□ -1.5
SCN1A-216ENST00000637968 COQ10AQ96MF6 247 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 NECTIN4Q96NY8 510 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 CHCHD6Q9BRQ6 235 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 OR51M1Q9H341 326 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 MUC13Q9H3R2 512 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 C14orf105Q9NVL8 296 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 GFOD1Q9NXC2 390 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 TINAGQ9UJW2 476 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 PCDHB12Q9Y5F1 795 aa5.67□□□□□ -1.5
SCN1A-216ENST00000637968 ABCA6Q8N139 1617 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 ALKQ9UM73 1620 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 SPATA31A5Q5VU36 1347 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 SPATA31A7Q8IWB4 1347 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 TUBAL3A6NHL2 446 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 PSMD3O43242 534 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 CDC123O75794 336 aaPredicted RBP5.66□□□□□ -1.5
SCN1A-216ENST00000637968 SNAPC5O75971 98 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 VNN1O95497 513 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 CYP11A1P05108 521 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 JUNP05412 331 aaKnown RBP5.66□□□□□ -1.5
SCN1A-216ENST00000637968 POU3F3P20264 500 aaPredicted RBP5.66□□□□□ -1.5
SCN1A-216ENST00000637968 UBA1P22314 1058 aaKnown RBP5.66□□□□□ -1.5
SCN1A-216ENST00000637968 STOMP27105 288 aa5.66□□□□□ -1.5
SCN1A-216ENST00000637968 GNALP38405 381 aa5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms