RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 SPDYE1Q8NFV5 336 aaPredicted RBP18.91■□□□□ 0.62
CLN3-262ENST00000637699 BLOC1S5Q8TDH9 187 aa18.91■□□□□ 0.62
CLN3-262ENST00000637699 CPT1BQ92523 772 aa18.91■□□□□ 0.62
CLN3-262ENST00000637699 RNF25Q96BH1 459 aaPredicted RBP18.91■□□□□ 0.62
CLN3-262ENST00000637699 CLIP3Q96DZ5 547 aa18.91■□□□□ 0.62
CLN3-262ENST00000637699 TEKT5Q96M29 485 aa18.91■□□□□ 0.62
CLN3-262ENST00000637699 SLC29A3Q9BZD2 475 aa18.91■□□□□ 0.62
CLN3-262ENST00000637699 FAM153AQ9UHL3 310 aa18.91■□□□□ 0.62
CLN3-262ENST00000637699 SLC24A2Q9UI40 661 aa18.91■□□□□ 0.62
CLN3-262ENST00000637699 TCFL5Q9UL49 500 aa18.91■□□□□ 0.62
CLN3-262ENST00000637699 CRYBG3Q68DQ2 2970 aa18.91■□□□□ 0.62
CLN3-262ENST00000637699 CELSR2Q9HCU4 2923 aa18.9■□□□□ 0.62
CLN3-262ENST00000637699 LOC285095A0A1B0GVY8 99 aa18.9■□□□□ 0.62
CLN3-262ENST00000637699 F5H423 210 aaPredicted RBP18.9■□□□□ 0.62
CLN3-262ENST00000637699 LCA5LO95447 670 aa18.9■□□□□ 0.62
CLN3-262ENST00000637699 DDAH2O95865 285 aa18.9■□□□□ 0.62
CLN3-262ENST00000637699 RAB40ALP0C0E4 278 aa18.9■□□□□ 0.62
CLN3-262ENST00000637699 ZFXP17010 805 aaPredicted RBP18.9■□□□□ 0.62
CLN3-262ENST00000637699 POLR2CP19387 275 aaPredicted RBP18.9■□□□□ 0.62
CLN3-262ENST00000637699 AKT1P31749 480 aa18.9■□□□□ 0.62
CLN3-262ENST00000637699 CD68P34810 354 aaPredicted RBP18.9■□□□□ 0.62
CLN3-262ENST00000637699 ITGA1P56199 1179 aa18.9■□□□□ 0.62
CLN3-262ENST00000637699 ABRQ12979 859 aa18.9■□□□□ 0.62
CLN3-262ENST00000637699 SLC6A19Q695T7 634 aa18.9■□□□□ 0.62
CLN3-262ENST00000637699 ZNF787Q6DD87 383 aa18.9■□□□□ 0.62
CLN3-262ENST00000637699 KDELC1Q6UW63 502 aa18.9■□□□□ 0.62
CLN3-262ENST00000637699 GLT6D1Q7Z4J2 308 aa18.9■□□□□ 0.62
CLN3-262ENST00000637699 RHOT1Q8IXI2 618 aa18.9■□□□□ 0.62
CLN3-262ENST00000637699 DSELQ8IZU8 1212 aa18.9■□□□□ 0.62
CLN3-262ENST00000637699 RBMXL3Q8N7X1 1067 aaKnown RBP18.9■□□□□ 0.62
CLN3-262ENST00000637699 DTX3LQ8TDB6 740 aa18.9■□□□□ 0.62
CLN3-262ENST00000637699 NAT14Q8WUY8 206 aa18.9■□□□□ 0.62
CLN3-262ENST00000637699 LRFN5Q96NI6 719 aa18.9■□□□□ 0.62
CLN3-262ENST00000637699 NLNQ9BYT8 704 aa18.9■□□□□ 0.62
CLN3-262ENST00000637699 LATS2Q9NRM7 1088 aa18.9■□□□□ 0.62
CLN3-262ENST00000637699 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP18.9■□□□□ 0.62
CLN3-262ENST00000637699 SAE1Q9UBE0 346 aaPredicted RBP18.9■□□□□ 0.62
CLN3-262ENST00000637699 SSU72P8A0A1W2PR75 194 aa18.89■□□□□ 0.61
CLN3-262ENST00000637699 SLC9B1P1A6NJY1 282 aa18.89■□□□□ 0.61
CLN3-262ENST00000637699 KRT86O43790 486 aa18.89■□□□□ 0.61
CLN3-262ENST00000637699 KRT1P04264 644 aa18.89■□□□□ 0.61
CLN3-262ENST00000637699 NFKB1P19838 968 aa18.89■□□□□ 0.61
CLN3-262ENST00000637699 MSH3P20585 1137 aa18.89■□□□□ 0.61
CLN3-262ENST00000637699 TNNT3P45378 269 aaPredicted RBP18.89■□□□□ 0.61
CLN3-262ENST00000637699 VAV2P52735 878 aa18.89■□□□□ 0.61
CLN3-262ENST00000637699 UBASH3AP57075 661 aa18.89■□□□□ 0.61
CLN3-262ENST00000637699 RAPSNQ13702 412 aa18.89■□□□□ 0.61
CLN3-262ENST00000637699 ITGA9Q13797 1035 aa18.89■□□□□ 0.61
CLN3-262ENST00000637699 GSE1Q14687 1217 aa18.89■□□□□ 0.61
CLN3-262ENST00000637699 LONRF2Q1L5Z9 754 aa18.89■□□□□ 0.61
CLN3-262ENST00000637699 OR4E2Q8NGC2 313 aa18.89■□□□□ 0.61
CLN3-262ENST00000637699 ZFPM2Q8WW38 1151 aa18.89■□□□□ 0.61
CLN3-262ENST00000637699 C19orf60Q96EN9 201 aa18.89■□□□□ 0.61
CLN3-262ENST00000637699 KIR3DX1Q9H7L2 352 aa18.89■□□□□ 0.61
CLN3-262ENST00000637699 FANCEQ9HB96 536 aa18.89■□□□□ 0.61
CLN3-262ENST00000637699 GPR83Q9NYM4 423 aa18.89■□□□□ 0.61
CLN3-262ENST00000637699 BTRCQ9Y297 605 aa18.89■□□□□ 0.61
CLN3-262ENST00000637699 PKP3Q9Y446 797 aa18.89■□□□□ 0.61
CLN3-262ENST00000637699 MGAT4DA6NG13 374 aa18.88■□□□□ 0.61
CLN3-262ENST00000637699 GAPDHSO14556 408 aaPredicted RBP18.88■□□□□ 0.61
CLN3-262ENST00000637699 GYPCP04921 128 aa18.88■□□□□ 0.61
CLN3-262ENST00000637699 POLBP06746 335 aa18.88■□□□□ 0.61
CLN3-262ENST00000637699 SLC35G4P0C7Q5 338 aa18.88■□□□□ 0.61
CLN3-262ENST00000637699 TNNT1P13805 278 aa18.88■□□□□ 0.61
CLN3-262ENST00000637699 CDH3P22223 829 aa18.88■□□□□ 0.61
CLN3-262ENST00000637699 RORAP35398 523 aa18.88■□□□□ 0.61
CLN3-262ENST00000637699 KRT33BQ14525 404 aa18.88■□□□□ 0.61
CLN3-262ENST00000637699 PTPRCAPQ14761 206 aa18.88■□□□□ 0.61
CLN3-262ENST00000637699 ODF2Q5BJF6 829 aa18.88■□□□□ 0.61
CLN3-262ENST00000637699 VSIG1Q86XK7 387 aa18.88■□□□□ 0.61
CLN3-262ENST00000637699 CARFQ8N187 725 aa18.88■□□□□ 0.61
CLN3-262ENST00000637699 ZBTB2Q8N680 514 aa18.88■□□□□ 0.61
CLN3-262ENST00000637699 TMEM102Q8N9M5 508 aaPredicted RBP18.88■□□□□ 0.61
CLN3-262ENST00000637699 SLC35G2Q8TBE7 412 aa18.88■□□□□ 0.61
CLN3-262ENST00000637699 PNPLA2Q96AD5 504 aa18.88■□□□□ 0.61
CLN3-262ENST00000637699 PCMTD2Q9NV79 361 aa18.88■□□□□ 0.61
CLN3-262ENST00000637699 HACD3Q9P035 362 aa18.88■□□□□ 0.61
CLN3-262ENST00000637699 ACSL5Q9ULC5 683 aa18.88■□□□□ 0.61
CLN3-262ENST00000637699 TMEM150CB9EJG8 249 aa18.87■□□□□ 0.61
CLN3-262ENST00000637699 EPOP01588 193 aa18.87■□□□□ 0.61
CLN3-262ENST00000637699 CAPN1P07384 714 aa18.87■□□□□ 0.61
CLN3-262ENST00000637699 HLA-DPA1P20036 260 aa18.87■□□□□ 0.61
CLN3-262ENST00000637699 VARSP26640 1264 aaKnown RBP18.87■□□□□ 0.61
CLN3-262ENST00000637699 WASHC5Q12768 1159 aa18.87■□□□□ 0.61
CLN3-262ENST00000637699 PRKAA1Q13131 559 aa18.87■□□□□ 0.61
CLN3-262ENST00000637699 ATP1A4Q13733 1029 aa18.87■□□□□ 0.61
CLN3-262ENST00000637699 PRKD1Q15139 912 aaPredicted RBP18.87■□□□□ 0.61
CLN3-262ENST00000637699 SLC18A3Q16572 532 aa18.87■□□□□ 0.61
CLN3-262ENST00000637699 PTCHD3Q3KNS1 767 aa18.87■□□□□ 0.61
CLN3-262ENST00000637699 DOPEY1Q5JWR5 2465 aa18.87■□□□□ 0.61
CLN3-262ENST00000637699 FAM198BQ6UWH4 519 aa18.87■□□□□ 0.61
CLN3-262ENST00000637699 MED25Q71SY5 747 aa18.87■□□□□ 0.61
CLN3-262ENST00000637699 MAMDC2Q7Z304 686 aaPredicted RBP18.87■□□□□ 0.61
CLN3-262ENST00000637699 LUZP1Q86V48 1076 aa18.87■□□□□ 0.61
CLN3-262ENST00000637699 HPS6Q86YV9 775 aa18.87■□□□□ 0.61
CLN3-262ENST00000637699 SYTL1Q8IYJ3 562 aa18.87■□□□□ 0.61
CLN3-262ENST00000637699 GLIS1Q8NBF1 620 aa18.87■□□□□ 0.61
CLN3-262ENST00000637699 IPMKQ8NFU5 416 aa18.87■□□□□ 0.61
CLN3-262ENST00000637699 OR2L2Q8NH16 312 aa18.87■□□□□ 0.61
CLN3-262ENST00000637699 OR1L3Q8NH93 324 aa18.87■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms