RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 INVSQ9Y283 1065 aa19.73■□□□□ 0.75
CLN3-250ENST00000636839 F8W8V4 182 aa19.73■□□□□ 0.75
CLN3-250ENST00000636839 SCAMP1O15126 338 aa19.73■□□□□ 0.75
CLN3-250ENST00000636839 POP7O75817 140 aaKnown RBP19.73■□□□□ 0.75
CLN3-250ENST00000636839 SEMA4FO95754 770 aa19.73■□□□□ 0.75
CLN3-250ENST00000636839 HSPA4LO95757 839 aa19.73■□□□□ 0.75
CLN3-250ENST00000636839 MPSTP25325 297 aa19.73■□□□□ 0.75
CLN3-250ENST00000636839 UNC50Q53HI1 259 aa19.73■□□□□ 0.75
CLN3-250ENST00000636839 C11orf96Q7Z7L8 435 aa19.73■□□□□ 0.75
CLN3-250ENST00000636839 CFAP206Q8IYR0 622 aa19.73■□□□□ 0.75
CLN3-250ENST00000636839 PJA1Q8NG27 643 aa19.73■□□□□ 0.75
CLN3-250ENST00000636839 DRC3Q9H069 523 aa19.73■□□□□ 0.75
CLN3-250ENST00000636839 KCNK13Q9HB14 408 aa19.73■□□□□ 0.75
CLN3-250ENST00000636839 TNFRSF12AQ9NP84 129 aa19.73■□□□□ 0.75
CLN3-250ENST00000636839 KLHL42Q9P2K6 505 aa19.73■□□□□ 0.75
CLN3-250ENST00000636839 IMPDH1P20839 514 aa19.72■□□□□ 0.75
CLN3-250ENST00000636839 ABRQ12979 859 aa19.72■□□□□ 0.75
CLN3-250ENST00000636839 MTAPQ13126 283 aa19.72■□□□□ 0.75
CLN3-250ENST00000636839 BCL7AQ4VC05 210 aa19.72■□□□□ 0.75
CLN3-250ENST00000636839 ZNF678Q5SXM1 525 aa19.72■□□□□ 0.75
CLN3-250ENST00000636839 NEK5Q6P3R8 708 aa19.72■□□□□ 0.75
CLN3-250ENST00000636839 FAM83HQ6ZRV2 1179 aaPredicted RBP19.72■□□□□ 0.75
CLN3-250ENST00000636839 CRLF3Q8IUI8 442 aa19.72■□□□□ 0.75
CLN3-250ENST00000636839 UBALD2Q8IYN6 164 aa19.72■□□□□ 0.75
CLN3-250ENST00000636839 GJD3Q8N144 294 aa19.72■□□□□ 0.75
CLN3-250ENST00000636839 FBXO39Q8N4B4 442 aa19.72■□□□□ 0.75
CLN3-250ENST00000636839 CAAP1Q9H8G2 361 aa19.72■□□□□ 0.75
CLN3-250ENST00000636839 MRPL40Q9NQ50 206 aaKnown RBP19.72■□□□□ 0.75
CLN3-250ENST00000636839 CD274Q9NZQ7 290 aa19.72■□□□□ 0.75
CLN3-250ENST00000636839 HGSO14964 777 aaPredicted RBP19.71■□□□□ 0.75
CLN3-250ENST00000636839 NUAK1O60285 661 aa19.71■□□□□ 0.75
CLN3-250ENST00000636839 SLCO2B1O94956 709 aa19.71■□□□□ 0.75
CLN3-250ENST00000636839 PDGFBP01127 241 aaPredicted RBP19.71■□□□□ 0.75
CLN3-250ENST00000636839 RCN2Q14257 317 aa19.71■□□□□ 0.75
CLN3-250ENST00000636839 CFAP157Q5JU67 520 aa19.71■□□□□ 0.75
CLN3-250ENST00000636839 PLEKHS1Q5SXH7 462 aa19.71■□□□□ 0.75
CLN3-250ENST00000636839 CFAP61Q8NHU2 1237 aa19.71■□□□□ 0.75
CLN3-250ENST00000636839 ASZ1Q8WWH4 475 aa19.71■□□□□ 0.75
CLN3-250ENST00000636839 NELL2Q99435 816 aa19.71■□□□□ 0.75
CLN3-250ENST00000636839 ZCCHC2Q9C0B9 1178 aaKnown RBP19.71■□□□□ 0.75
CLN3-250ENST00000636839 KDM4CQ9H3R0 1056 aa19.71■□□□□ 0.75
CLN3-250ENST00000636839 GSTO2Q9H4Y5 243 aa19.71■□□□□ 0.75
CLN3-250ENST00000636839 EPHX3Q9H6B9 360 aa19.71■□□□□ 0.75
CLN3-250ENST00000636839 A0A0G2JND7 137 aa19.71■□□□□ 0.75
CLN3-250ENST00000636839 SLC5A10A0PJK1 596 aa19.71■□□□□ 0.75
CLN3-250ENST00000636839 LRRC72A6NJI9 287 aa19.71■□□□□ 0.75
CLN3-250ENST00000636839 UBFD1O14562 309 aaKnown RBP19.71■□□□□ 0.75
CLN3-250ENST00000636839 VEGFDO43915 354 aa19.71■□□□□ 0.75
CLN3-250ENST00000636839 SUPT7LO94864 414 aa19.71■□□□□ 0.75
CLN3-250ENST00000636839 CBSLP0DN79 551 aa19.71■□□□□ 0.75
CLN3-250ENST00000636839 EEF1DP29692 281 aaKnown RBP19.71■□□□□ 0.75
CLN3-250ENST00000636839 CBSP35520 551 aa19.71■□□□□ 0.75
CLN3-250ENST00000636839 HERVK_113P63132 956 aa19.71■□□□□ 0.75
CLN3-250ENST00000636839 NFKB2Q00653 900 aa19.71■□□□□ 0.75
CLN3-250ENST00000636839 GTF2H3Q13889 308 aa19.71■□□□□ 0.75
CLN3-250ENST00000636839 NFE2L1Q14494 772 aa19.71■□□□□ 0.75
CLN3-250ENST00000636839 TPRG1LQ5T0D9 272 aa19.71■□□□□ 0.75
CLN3-250ENST00000636839 FRA10AC1Q70Z53 315 aa19.71■□□□□ 0.75
CLN3-250ENST00000636839 TRIM69Q86WT6 500 aa19.71■□□□□ 0.75
CLN3-250ENST00000636839 SLC22A9Q8IVM8 553 aa19.71■□□□□ 0.75
CLN3-250ENST00000636839 CACNA2D3Q8IZS8 1091 aa19.71■□□□□ 0.75
CLN3-250ENST00000636839 DEFB119Q8N690 84 aa19.71■□□□□ 0.75
CLN3-250ENST00000636839 CCDC197Q8NCU1 140 aa19.71■□□□□ 0.75
CLN3-250ENST00000636839 SREK1Q8WXA9 508 aaKnown RBP19.71■□□□□ 0.75
CLN3-250ENST00000636839 ASB2Q96Q27 587 aa19.71■□□□□ 0.75
CLN3-250ENST00000636839 APOOQ9BUR5 198 aa19.71■□□□□ 0.75
CLN3-250ENST00000636839 GPR174Q9BXC1 333 aa19.71■□□□□ 0.75
CLN3-250ENST00000636839 ERVK-6Q9BXR3 956 aa19.71■□□□□ 0.75
CLN3-250ENST00000636839 FAM126AQ9BYI3 521 aaPredicted RBP19.71■□□□□ 0.75
CLN3-250ENST00000636839 SGK2Q9HBY8 427 aa19.71■□□□□ 0.75
CLN3-250ENST00000636839 CIDEBQ9UHD4 219 aa19.71■□□□□ 0.75
CLN3-250ENST00000636839 ZDHHC2Q9UIJ5 367 aa19.71■□□□□ 0.75
CLN3-250ENST00000636839 A0A1B0GTL3 188 aa19.7■□□□□ 0.74
CLN3-250ENST00000636839 SYCE1LA8MT33 242 aa19.7■□□□□ 0.74
CLN3-250ENST00000636839 TMEM114B3SHH9 223 aa19.7■□□□□ 0.74
CLN3-250ENST00000636839 TMEM233B4DJY2 109 aa19.7■□□□□ 0.74
CLN3-250ENST00000636839 CHUKO15111 745 aa19.7■□□□□ 0.74
CLN3-250ENST00000636839 KLK8O60259 260 aa19.7■□□□□ 0.74
CLN3-250ENST00000636839 IGHV4-34P06331 123 aa19.7■□□□□ 0.74
CLN3-250ENST00000636839 SYTL3Q4VX76 610 aa19.7■□□□□ 0.74
CLN3-250ENST00000636839 ZNF771Q7L3S4 317 aaPredicted RBP19.7■□□□□ 0.74
CLN3-250ENST00000636839 MAVSQ7Z434 540 aa19.7■□□□□ 0.74
CLN3-250ENST00000636839 ADAMTSL2Q86TH1 951 aa19.7■□□□□ 0.74
CLN3-250ENST00000636839 PPP4R1Q8TF05 950 aa19.7■□□□□ 0.74
CLN3-250ENST00000636839 C10orf82Q8WW14 230 aa19.7■□□□□ 0.74
CLN3-250ENST00000636839 ASB11Q8WXH4 323 aa19.7■□□□□ 0.74
CLN3-250ENST00000636839 GRAMD1AQ96CP6 724 aa19.7■□□□□ 0.74
CLN3-250ENST00000636839 CCDC126Q96EE4 140 aa19.7■□□□□ 0.74
CLN3-250ENST00000636839 L3HYPDHQ96EM0 354 aa19.7■□□□□ 0.74
CLN3-250ENST00000636839 BMFQ96LC9 184 aa19.7■□□□□ 0.74
CLN3-250ENST00000636839 RMDN2Q96LZ7 410 aa19.7■□□□□ 0.74
CLN3-250ENST00000636839 ZNHIT2Q9UHR6 403 aa19.7■□□□□ 0.74
CLN3-250ENST00000636839 SLCO1B1Q9Y6L6 691 aa19.7■□□□□ 0.74
CLN3-250ENST00000636839 QSOX1O00391 747 aa19.69■□□□□ 0.74
CLN3-250ENST00000636839 FFAR2O15552 330 aa19.69■□□□□ 0.74
CLN3-250ENST00000636839 LATO43561 262 aa19.69■□□□□ 0.74
CLN3-250ENST00000636839 FSBPO95073 299 aa19.69■□□□□ 0.74
CLN3-250ENST00000636839 IGLV3-19P01714 112 aa19.69■□□□□ 0.74
CLN3-250ENST00000636839 ENO3P13929 434 aaPredicted RBP19.69■□□□□ 0.74
CLN3-250ENST00000636839 SFSWAPQ12872 951 aaKnown RBP19.69■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 109.3 ms