RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 TRAPPC5Q8IUR0 188 aa14.12□□□□□ -0.15
CLN3-249ENST00000636685 TEX26Q8N6G2 289 aa14.12□□□□□ -0.15
CLN3-249ENST00000636685 NR4A3Q92570 626 aa14.12□□□□□ -0.15
CLN3-249ENST00000636685 MTFMTQ96DP5 389 aaKnown RBP14.12□□□□□ -0.15
CLN3-249ENST00000636685 AGAP4Q96P64 663 aa14.12□□□□□ -0.15
CLN3-249ENST00000636685 POLR1EQ9GZS1 481 aaKnown RBP14.12□□□□□ -0.15
CLN3-249ENST00000636685 SLC6A20Q9NP91 592 aa14.12□□□□□ -0.15
CLN3-249ENST00000636685 GPN3Q9UHW5 284 aaPredicted RBP14.12□□□□□ -0.15
CLN3-249ENST00000636685 ATP6V1DQ9Y5K8 247 aa14.12□□□□□ -0.15
CLN3-249ENST00000636685 CFAP20Q9Y6A4 193 aaKnown RBP14.12□□□□□ -0.15
CLN3-249ENST00000636685 VEGFDO43915 354 aa14.11□□□□□ -0.15
CLN3-249ENST00000636685 UMODP07911 640 aa14.11□□□□□ -0.15
CLN3-249ENST00000636685 DESP17661 470 aa14.11□□□□□ -0.15
CLN3-249ENST00000636685 VCLP18206 1134 aa14.11□□□□□ -0.15
CLN3-249ENST00000636685 CDH3P22223 829 aa14.11□□□□□ -0.15
CLN3-249ENST00000636685 PSMA2P25787 234 aa14.11□□□□□ -0.15
CLN3-249ENST00000636685 GALNT3Q14435 633 aa14.11□□□□□ -0.15
CLN3-249ENST00000636685 QPCTQ16769 361 aa14.11□□□□□ -0.15
CLN3-249ENST00000636685 PLEKHA7Q6IQ23 1121 aa14.11□□□□□ -0.15
CLN3-249ENST00000636685 TMEM207Q6UWW9 146 aa14.11□□□□□ -0.15
CLN3-249ENST00000636685 FAM83HQ6ZRV2 1179 aaPredicted RBP14.11□□□□□ -0.15
CLN3-249ENST00000636685 CARFQ8N187 725 aa14.11□□□□□ -0.15
CLN3-249ENST00000636685 OR2Y1Q8NGV0 311 aa14.11□□□□□ -0.15
CLN3-249ENST00000636685 ZNF653Q96CK0 615 aa14.11□□□□□ -0.15
CLN3-249ENST00000636685 TAAR6Q96RI8 345 aa14.11□□□□□ -0.15
CLN3-249ENST00000636685 ZSCAN5AQ9BUG6 496 aa14.11□□□□□ -0.15
CLN3-249ENST00000636685 NUP85Q9BW27 656 aa14.11□□□□□ -0.15
CLN3-249ENST00000636685 PCDH9Q9HC56 1237 aa14.11□□□□□ -0.15
CLN3-249ENST00000636685 IMP3Q9NV31 184 aaKnown RBP14.11□□□□□ -0.15
CLN3-249ENST00000636685 SERTAD3Q9UJW9 196 aa14.11□□□□□ -0.15
CLN3-249ENST00000636685 FBXL4Q9UKA2 621 aa14.11□□□□□ -0.15
CLN3-249ENST00000636685 CDYLQ9Y232 598 aa14.11□□□□□ -0.15
CLN3-249ENST00000636685 CCDC66A2RUB6 948 aa14.1□□□□□ -0.15
CLN3-249ENST00000636685 E7EQ34 232 aa14.1□□□□□ -0.15
CLN3-249ENST00000636685 AGPSO00116 658 aa14.1□□□□□ -0.15
CLN3-249ENST00000636685 PES1O00541 588 aaKnown RBP14.1□□□□□ -0.15
CLN3-249ENST00000636685 UNC5CO95185 931 aa14.1□□□□□ -0.15
CLN3-249ENST00000636685 POLR2CP19387 275 aaPredicted RBP14.1□□□□□ -0.15
CLN3-249ENST00000636685 LMAN1P49257 510 aa14.1□□□□□ -0.15
CLN3-249ENST00000636685 SRSF11Q05519 484 aaKnown RBP14.1□□□□□ -0.15
CLN3-249ENST00000636685 SLC9A5Q14940 896 aa14.1□□□□□ -0.15
CLN3-249ENST00000636685 CAMK4Q16566 473 aa14.1□□□□□ -0.15
CLN3-249ENST00000636685 PRAMEF13Q5VWM6 474 aa14.1□□□□□ -0.15
CLN3-249ENST00000636685 RPUSD3Q6P087 351 aaKnown RBP14.1□□□□□ -0.15
CLN3-249ENST00000636685 TMCO3Q6UWJ1 677 aa14.1□□□□□ -0.15
CLN3-249ENST00000636685 LINC00696Q6ZRV3 163 aa14.1□□□□□ -0.15
CLN3-249ENST00000636685 TRAM1L1Q8N609 369 aa14.1□□□□□ -0.15
CLN3-249ENST00000636685 OR1N1Q8NGS0 311 aa14.1□□□□□ -0.15
CLN3-249ENST00000636685 NANOS1Q8WY41 292 aaKnown RBP14.1□□□□□ -0.15
CLN3-249ENST00000636685 PTERQ96BW5 349 aa14.1□□□□□ -0.15
CLN3-249ENST00000636685 TRIM56Q9BRZ2 755 aaKnown RBP14.1□□□□□ -0.15
CLN3-249ENST00000636685 GSX1Q9H4S2 264 aaPredicted RBP14.1□□□□□ -0.15
CLN3-249ENST00000636685 EPS8L2Q9H6S3 715 aa14.1□□□□□ -0.15
CLN3-249ENST00000636685 SEMA3GQ9NS98 782 aa14.1□□□□□ -0.15
CLN3-249ENST00000636685 SEPT11Q9NVA2 429 aaKnown RBP14.1□□□□□ -0.15
CLN3-249ENST00000636685 TMPRSS11EQ9UL52 423 aa14.1□□□□□ -0.15
CLN3-249ENST00000636685 TTLL3Q9Y4R7 772 aa14.1□□□□□ -0.15
CLN3-249ENST00000636685 PCDHGB6Q9Y5F9 930 aa14.1□□□□□ -0.15
CLN3-249ENST00000636685 PRPSAP2O60256 369 aa14.09□□□□□ -0.15
CLN3-249ENST00000636685 SLC4A1P02730 911 aa14.09□□□□□ -0.15
CLN3-249ENST00000636685 HBQ1P09105 142 aa14.09□□□□□ -0.15
CLN3-249ENST00000636685 MTHFD1P11586 935 aaKnown RBP14.09□□□□□ -0.15
CLN3-249ENST00000636685 ST6GAL1P15907 406 aa14.09□□□□□ -0.15
CLN3-249ENST00000636685 MIPP30301 263 aa14.09□□□□□ -0.15
CLN3-249ENST00000636685 SOX5P35711 763 aa14.09□□□□□ -0.15
CLN3-249ENST00000636685 RPL26P61254 145 aaKnown RBP14.09□□□□□ -0.15
CLN3-249ENST00000636685 NIPAL4Q0D2K0 466 aa14.09□□□□□ -0.15
CLN3-249ENST00000636685 HSP90AA4PQ58FG1 418 aa14.09□□□□□ -0.15
CLN3-249ENST00000636685 ARRDC2Q8TBH0 407 aa14.09□□□□□ -0.15
CLN3-249ENST00000636685 SPOCK3Q9BQ16 436 aa14.09□□□□□ -0.15
CLN3-249ENST00000636685 C17orf62Q9BQA9 187 aa14.09□□□□□ -0.15
CLN3-249ENST00000636685 TUBGCP2Q9BSJ2 902 aa14.09□□□□□ -0.15
CLN3-249ENST00000636685 ANP32EQ9BTT0 268 aa14.09□□□□□ -0.15
CLN3-249ENST00000636685 KLHL25Q9H0H3 589 aa14.09□□□□□ -0.15
CLN3-249ENST00000636685 GANQ9H2C0 597 aa14.09□□□□□ -0.15
CLN3-249ENST00000636685 ZWILCHQ9H900 591 aa14.09□□□□□ -0.15
CLN3-249ENST00000636685 SYTL2Q9HCH5 934 aa14.09□□□□□ -0.15
CLN3-249ENST00000636685 C1GALT1Q9NS00 363 aa14.09□□□□□ -0.15
CLN3-249ENST00000636685 IFT80Q9P2H3 777 aaPredicted RBP14.09□□□□□ -0.15
CLN3-249ENST00000636685 NDOR1Q9UHB4 597 aa14.09□□□□□ -0.15
CLN3-249ENST00000636685 SLC24A2Q9UI40 661 aa14.09□□□□□ -0.15
CLN3-249ENST00000636685 POMT2Q9UKY4 750 aa14.09□□□□□ -0.15
CLN3-249ENST00000636685 RPL26L1Q9UNX3 145 aaKnown RBP14.09□□□□□ -0.15
CLN3-249ENST00000636685 AKAP6Q13023 2319 aa14.09□□□□□ -0.15
CLN3-249ENST00000636685 ANKRD66B4E2M5 251 aa14.08□□□□□ -0.16
CLN3-249ENST00000636685 H3BRJ5 948 aa14.08□□□□□ -0.16
CLN3-249ENST00000636685 CLDN14O95500 239 aa14.08□□□□□ -0.16
CLN3-249ENST00000636685 DCDC1P59894 354 aa14.08□□□□□ -0.16
CLN3-249ENST00000636685 TMEM115Q12893 351 aaPredicted RBP14.08□□□□□ -0.16
CLN3-249ENST00000636685 XRCC4Q13426 336 aa14.08□□□□□ -0.16
CLN3-249ENST00000636685 NFE2L1Q14494 772 aa14.08□□□□□ -0.16
CLN3-249ENST00000636685 IRAK1BP1Q5VVH5 260 aa14.08□□□□□ -0.16
CLN3-249ENST00000636685 PDPK2PQ6A1A2 396 aa14.08□□□□□ -0.16
CLN3-249ENST00000636685 ALG1LQ6GMV1 187 aa14.08□□□□□ -0.16
CLN3-249ENST00000636685 AMZ2Q86W34 360 aa14.08□□□□□ -0.16
CLN3-249ENST00000636685 INSM2Q96T92 566 aaPredicted RBP14.08□□□□□ -0.16
CLN3-249ENST00000636685 ZFYVE1Q9HBF4 777 aa14.08□□□□□ -0.16
CLN3-249ENST00000636685 NLRC4Q9NPP4 1024 aa14.08□□□□□ -0.16
CLN3-249ENST00000636685 SHOC2Q9UQ13 582 aa14.08□□□□□ -0.16
CLN3-249ENST00000636685 RTTNQ86VV8 2226 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms